BAC Information

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BAC

Clone NameMSMg01-122K18
Chromosome2 (Build37)
Map Location 56,635,899 - 56,636,611
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122K18.T7 (MSMg01no122_k18.b1)MSMg01-122K18.TJ (MSMg01no122_k18.g1)
ACCAG332470AG332471
length1,1771,066
length of high quality
(start - end)		477 (40 - 516)715 (81 - 795)
definitionCHROMAT_FILE: MSMg01no122_k18.b1 PHD_FILE: MSMg01no122_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:24 2005CHROMAT_FILE: MSMg01no122_k18.g1 PHD_FILE: MSMg01no122_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAATAGTNNNNNGACATTGGGCGCTATAGACTCCTAAGGGAGAGGATC
CGCGGAATTCACAACAGAAGTATTTCCATAGGCAAGAAGCACTTAAAGAA
AGGTTCTAGTTGCATCTGTAGCAGAGGATTGCCTAGTAGGCCATCAATGG
GAGGAGAGGCCCTTTTTCTTGTGAAGATCATATGCCCCAGTACAGGGGAA
TGCCAGGGCCAGGAATTAAGAGTGGGTGGGTTGGGGAACAGGCTTGAGAA
GGGTTTAGGGGACTTTGGGGATAGCATTTGAAATGTAAATGGAGAAAATA
TCTAAAAAAAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGGGAGA
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTNNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTNTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTAATATT
TTATTTAATATATTTATTTTTATTTTTTTTNATAATTATTTTTTTTTTTT
TNTTTTTTTTTTATTTTTATTTTTATTTTTTTTTTTTTATTTTTTTATTA
TTTATTTTTTATTTTATTTTATATTTTTTTTTTTTATATTTTTTATTTTA
TTTTTTATTTTTTTTTTTTTTTTTTTTTTTATTTTTTTATTTTTATAATT
TTTTTTTTATTTTTATTTATTTATTATTTTTTTTTATTTTTTATTATTAT
TAATTTAATATTTTATTTTTTTAATATTTTTTTAANTTTTTATTTTTATT
TATATTTTTATTTATATTATATATTATATATTTATTATTTATTTATTTTT
ATATATATATTTTTTATTTTTTATATA

CTTTAAGTTNNNNAATCAGTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAACTCTCTTTTCTGTCC
ACTCATGTGATCACTTCTTCAAATGGTATTCTATTATGGCAATTATTATT
TATTCTAGAATAGCTGCCAAAATTTTTTTGCAGTCATTTGAAAGCTCTCT
CTCTAGCCATAAAAATTAATGATCTCTTCTCTCTGTTCCCCAAATACTTC
ATCAAAATTACCTAGTGAATCTTTTTCACTCACCAGACTAACTCAACTTG
CTCTACATTCTTTATTTTTAATTTTTATTTCATTTATTTACAGAGAGAGA
GAGAGAGATGTGTTTATGTGTTTATGTTCCAGTGAGAGTGTGGAGAAGTT
GGTAAATAGGCAAGGGGGAATCCATATTGCTTTTACTTGGAGAATACATT
CATGTCTTCTCTGACTAGGGTCCATGAGTCTATCACTTCTTTCATCTTTT
TTTTTTTTAATTCTGTAGTTGTTTTGAACTTTTTAAAAATTTCTTGATTA
TTTCTGGGACACATGCTATTCCTTAAATTAAAAAAAAATTTTGTTTTAAA
TGTTTTCTTGTTGTTAACTTTCTTAGTTACCATACAAAATAATGGATTCC
TTGTGATATCTTCATAAACCTATATCATTTTAATTTGAAACAATTTGCTC
CTTTGCTGTCTCACTCCTCTGATCCTTGCTAGGCCCTTTTCTTTACTTAC
AGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT
NNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTCTTNNTTTTTTTTTTTTTTCT
TNTNTNTTCTTTTNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_k18.g1 MSMg01no122_k18.g1 CHROMAT_FILE:
MSMg01no122_k18.g1 PHD_FILE: MSMg01no122_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:24 2005
         (715 letters)



>mm_chr2_56635661_56636775
          Length = 1115

 Score = 1344 bits (695), Expect = 0.0
 Identities = 710/715 (99%), Gaps = 2/715 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaactctcttttctgtccactcatgtgatcacttcttcaaatggtattctattatggc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 951 atgaactctcttttctgtccactcatgtgatcactt-ttcaaatggtattctattatggc 893

                                                                       
Query: 61  aattattatttattctagaatagctgccaaaatttttttgcagtcatttgaaagctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aattattatttattctagaatagctgccaaaatttttttgcagtcatttgaaagctctct 833

                                                                       
Query: 121 ctctagccataaaaattaatgatctcttctctctgttccccaaatacttcatcaaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ctctagccataaaaattaatgatctcttctctctgttccccaaatacttcatcaaaatta 773

                                                                       
Query: 181 cctagtgaatctttttcactcaccagactaactcaacttgctctacattctttattttta 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cctagtgaatcattttcactcaccagactaactcaacttgctctacattctttattttta 713

                                                                       
Query: 241 atttttatttcatttatttacagagagagagagagagatgtgtttatgtgtttatgttcc 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 712 atttttatttcatttatttacagagagagagagagagatgtgtttaagtgtttatgttcc 653

                                                                       
Query: 301 agtgagagtgtggagaagttggtaaataggcaagggggaatccatattgcttttacttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agtgagagtgtggagaagttggtaaataggcaagggggaatccatattgcttttacttgg 593

                                                                       
Query: 361 agaatacattcatgtcttctctgactagggtccatgagtctatcacttctttcatctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agaatacattcatgtcttctctgactagggtccatgagtctatcacttctttcatctttt 533

                                                                       
Query: 421 ttttttttaattctgtagttgttttgaactttttaaaaatttcttgattatttctgggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttttttttaattctgtagttgttttgaactttttaaaaatttcttgattatttctgggac 473

                                                                       
Query: 481 acatgctattccttaaattaaaaaaaaattttgttttaaatgttttcttgttgttaactt 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 472 acatgctattccttaaattaaaaaaaaattt-gttttaaatgttttcttgttgttaactt 414

                                                                       
Query: 541 tcttagttaccatacaaaataatggattccttgtgatatcttcataaacctatatcattt 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 413 tcttagttaccatacaaaataatggattccttgtgatatctttataaacctatatcattt 354

                                                                       
Query: 601 taatttgaaacaatttgctcctttgctgtctcactcctctgatccttgctaggccctttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taatttgaaacaatttgctcctttgctgtctcactcctctgatccttgctaggccctttt 294

                                                                  
Query: 661 ctttacttacagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 715
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctttacttacagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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