BAC Information

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BAC

Clone NameMSMg01-122L04
Chromosome2 (Build37)
Map Location 138,753,935 - 138,754,350
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122L04.T7 (MSMg01no122_l04.b1)MSMg01-122L04.TJ (MSMg01no122_l04.g1)
ACCAG332488AG332489
length1,1791,180
length of high quality
(start - end)
364 (127 - 490)681 (89 - 769)
definitionCHROMAT_FILE: MSMg01no122_l04.b1 PHD_FILE: MSMg01no122_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:27 2005CHROMAT_FILE: MSMg01no122_l04.g1 PHD_FILE: MSMg01no122_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTATTTTNNNNNNAACACTGGGCGCTATAGACTACTATAGGGAGAGGATC
CGCGGAATTCTATTCAAGAATATGTTCATTTTTGGTCTGTTGTGTATTGT
CATGCTAAATTCTGTACCTGAAAGTCTTGGCCTAGACTGACATCTGTTTG
CAAGCTTTCGTTGTACAAGCCTTGTTCCTTGATTTAAAACTATTGGTTAA
ATCTAATAGGCTACAGCCAATTACTGGAGGGATTAGAGGTAGGTGGGTTT
AAAGTGACCTGGGAGAAAAAGAGAAGAGGAAGCTGCCATGAGTGGAGATG
GACCATGAGCACATGGCTAAAAGAAACAGCAAATGTCTGGGGTATGCTGC
TGGGGAGGTAGTTAGGCCAGCAGTTAAAAGAGTAGATTAGGGGTTACCCC
ACATTGATTGTCAAAGCCAAAATAAATAAATAAATAAATAAATAAACAGG
CATATTCTTGACTCATTTATTTGTAAGCTAGTTGGGGATAAGCTTATAGT
GGTCGTACTACAGTAACAGAAGCTGGTTTGGAGCAACTTTAGAGCACTGC
CTACCAATAAAGGTGACAGTAACTTAAATTGTTAATGGCATGCATATTCT
GTTTCTTCTCTTAGAAAACTGATCTCACAAGAAGACAGTGGCTAAACAGG
AACAATGTAAACAAACGAATGCAGATGAATCATGAGGTTAGTGGGCTAAG
CTTGGGATATTAGGGGCAAGAGAAGTGAACAGGATGGGCTTCTTAACCCC
TTTGCTCCCAAATAATTGCAGCACAGTTTTTGCATACCCTCTAGTTAATT
TTTATTTCCTGCTTAAGTGACACAGAAGCTTGGTATTTTTATTAAACATC
CTGAACAGGTTGAACTATTCCTATCCCTCCTTGGGTCTTGCCCAATTTCT
TAGCCACTTATTGCTTTTCCCTTCCTCCTGAATTCTTTGTTCTGGCTTCT
CCGGTGGTCCATGTGTTAACTTTCTTTACTGTTCTCTTTCACTGTTAACC
TTCCCCCTTAAATTCTTCCTTGGCCTTGATCTACCTGGTCTTCCTCCCAC
TTCCTTTCTTTATTCCTTCTTTCTTTTCCCTTTTTTATTCTTCCCCATCT
CCTGGTACTCCTACCAACAATTTCTCCCATGCATCTTATTCATTTACATA
TATTCACCTGACCTTTTTACTCACTCCTT
CTTTCTTTTNNNAAACAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAATTCTAAGCATGGTCTTT
AGTTGCTTGTTGGCAAACACTCACTTCATTTTCCTAATATTGATTAAATA
AATTAACATTTGCTATAGTTGCAAAGTGACATGTAATCTGAAGGCAAGCT
GCTTTTGAATACTGTGTTTCTGACGTCAATAATCATGGTGCAGAGTGTCC
TTTAGGAATATGGTATTCTTCTGTAATAGTTCATAGATTTTCTTTGTATG
TACTTGTATGTGTGTGTGCACATAAGAACATGCATGTGTAGGTCAGAGTT
CATTGTTGAGGGTCCCCTTAATCATTACCCACCTTATTTTTTTTTAAGAT
ATGTCTCTTAGGTAACTGAAGCTCACCAATTTGGACAGGCCAGTTGGAAA
GCAAGCCTTGGGGATCTGCCTGTCTCTGCATCACCAACACTGGAATTATA
GGTGTATGCAGCCACTGCTTGCTTTTCTTTAAGGGTTATGAATTGAATTC
AGGTCCTCACAAATGCATGGCAAGTGTTTAACTGATGGAGCCATCAATCT
AGACACTAAATCCTTTGTATTTTCTTATATGCACAGCTACTCTGAACTCT
GAAAGGTGCCCTTTCATGAAGGTTGATATTTTGCAATAAAGCCACGTTGA
CAAATTTTTCTGGATTGTTGCTGCCCATAAATGTGATTTCAAGGCTTTAT
ACCTGTGCCTTTGGCTCCTCAGAAACCTTGTGGCTTTAGTATTCCATCTA
CAAACTGCCCTACTTGATAACAATTAGAAACGATGCCAAATGCCAAAGTA
CTTTTTTTATTTGGAGGAGAAAATAGCAGAAATAGTAACCATTCATAACA
CTTTCATCTGTTCTTGACAATCCATCACAATAGATCAAAAATGTACATAT
TTCTCCTCCAAAATTAAAGAAATGTGGTAAGTAAAAATGCTAATTTCATT
TTAAGCCTGGTTGAACACATTTCAAATAAGCACAATGCCCATTTCCTAAA
GGGAACCCTGAAAAAATAAACCCCCCCCTAACCCATAATCCGAATCTTTT
TATTTAAAAAGAAAGAAAACCTTTCCCTCCTCAAACAATGTGTTTTAAAA
AAAGAGGGGCGCTTTTTATATAATCTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_l04.g1 MSMg01no122_l04.g1 CHROMAT_FILE:
MSMg01no122_l04.g1 PHD_FILE: MSMg01no122_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:27 2005
         (681 letters)



>mm_chr2_138753935_138755015
          Length = 1081

 Score =  727 bits (376), Expect = 0.0
 Identities = 406/416 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatggtctttagttgcttgttggcaaacactcacttcattttcctaatattgattaaa 60
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 416 agcatggtcttcagttgcttgttggcaaatactcacttcattttcctaatattgattaaa 357

                                                                       
Query: 61  taaattaacatttgctatagttgcaaagtgacatgtaatctgaaggcaagctgcttttga 120
           |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct: 356 taaattaacatttgctatggtttcagagtgacatgtaatctgaaggcaagctgcttttga 297

                                                                       
Query: 121 atactgtgtttctgacgtcaataatcatggtgcagagtgtcctttaggaatatggtattc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 296 atactgtgtttctgacgtcaataatcatggtgcagattgtcctttaggaatatggtattc 237

                                                                       
Query: 181 ttctgtaatagttcatagattttctttgtatgtacttgtatgtgtgtgtgcacataagaa 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 236 ttctgtaatagttcatagattttctttgtgtgtacttgtatgtgtgtgtgcacataagaa 177

                                                                       
Query: 241 catgcatgtgtaggtcagagttcattgttgagggtccccttaatcattacccaccttatt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 176 catgcatgtgtaggtcagagttcattgttgagggtccccttaatcattacccacctgatt 117

                                                                       
Query: 301 tttttttaagatatgtctcttaggtaactgaagctcaccaatttggacaggccagttgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tttttttaagatatgtctcttaggtaactgaagctcaccaatttggacaggccagttgga 57

                                                                   
Query: 361 aagcaagccttggggatctgcctgtctctgcatcaccaacactggaattataggtg 416
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 56  tagcaagccttggggatctgcctgtctctgcatcaccagcactggaattataggtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)