BAC Information

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BAC

Clone NameMSMg01-122M06
Chromosome2 (Build37)
Map Location 73,048,307 - 73,048,965
singlet/doubletsinglet
Overlap geneGtpbp9
Upstream geneRapgef4, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, LOC620110
Downstream geneSp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122M06.T7 (MSMg01no122_m06.b1)MSMg01-122M06.TJ (MSMg01no122_m06.g1)
ACCAG332538AG332539
length1,0881,280
length of high quality
(start - end)		737 (83 - 819)104 (78 - 181)
definitionCHROMAT_FILE: MSMg01no122_m06.b1 PHD_FILE: MSMg01no122_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:36 2005CHROMAT_FILE: MSMg01no122_m06.g1 PHD_FILE: MSMg01no122_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACCTNNNNNGTCAATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTCATTTTTGATAACCTTGTCCTGAAGATTTAATTCAGGG
CTTATGTGAAAATTCCTTTATTTTAATGCAGTAGTTTACTCAACTTTGGC
AATTGTGTTTGGTTGTAAAATTCATTTTTTATAGAATGATCGTTCTTTAA
ACTGTATCAGGTAGAGTTGACTGTATGAAACACAGATCTTTTAAACAAGA
AAAAAGAGGCTTACTGGAAGAATTGAAGGAGCGGACAGCTAGACATCAGA
AGGCTAAGAGCTCAGGTGAGGCAGGCGTGGATCAGTCAGTCCACGTGGAA
CTCAGCTACACCAGCTCTTGACCTGCCTGATTCTTAGCTGGGATACTTAT
TCTGTTGCACAGATTCCTGGACAAGAAAGGCCAATTAGATCTGTCTAGCT
TTGAATGGGTTTACAAGAAGTAGATTGGAGGTTGGGGTAGTTTTCTTAAG
GATAGTCCACTGGTTGCAATAAGGGCAGTCAATTTAGAAATTGTTCTAGT
TAGAGTTGCTGCTGTTCTGATGAACACCCACAACCAAAAGCAACTTGTGG
AGGAAAGGGTTAACTTGGGTTATGTATTCTGAATCGCAGTCCACTGAAAG
AAGCCAGTGTGAACACAAACTAGATGGGAACCTGGAGGCGGGAGCTGATG
CAGGGACCATGCAGGGGTGCTGCTTACTGGCCTGCTTCAGATGGCTTTGC
TCAGCTTGCTTTTTTGTAGAACCAAGGACCACCTACCCAGGCATGTGAGC
TGGGCCCACCCCTGTCAAACACTAATTAAGAAAATACTGTGCAGTCTTGC
TTACAGTTATAGAGGCAGTTTTTTCAATTGAAAGTCCCTTCCTCTCAGGT
GGTTCCAGCCTTGTGTCAAGTTGGCATAAAACTAACCAGGCCAAAACCCT
TCTGAAAAAACCTTGTTAATATAAAAGAAGTAAATTAAACTTGCCTTTTT
TAATAATGTAATCCTGCTAAATTACTAAGAAACCTAAATTGGTCCCTATT
TCCTAAGCTTTAACCTAATTTTTTTTTGGAATTTTTTG

NNTTTGACGCTGGGTGCCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTAAGAAAAAGAGTTTGAGGAGGAAAGGAA
AGGAGAGACGTTAGAAGGTGAGGGAAGCAGGGAAGGGGAGGGAGGGTCAG
GAAGTGGGGAGGACAGGAGTGGAGGCTGTGGTTCAGCAGAGCCTCTGGCT
GGCCTCTAAGGCAAATGCCAGGGAGATGGGGAAAGAGTCAGCAAGGTCAC
CTAGACCAGGGTTGCAATGTAAGGTCAGGCCGGATGGGTGACACTGGCCT
GAGGGAGAGCATGCAGTATGGCCTGTGTCTGTAGAGGGGGTTATTCACCC
TAATCCTGACCCCCCTTGTACTTGAATAGATTTCTCGAGGTTTTTTCTTT
TTCCCAGACCTGCCTTTGAGTCTTGTGTCTGGGTTTTGGCCCGCCTCTGT
TTTATTACCCACTCTGTGCTGATTTGGCTTTACTTCTATTTGATTCCCTT
TATTTTGCGTCTTATTCCGTGCTTCTATTTGTATAGTTATTTCTTCCTTT
TCTCTGTCATCTTGCCCTTTGTCCCTCTTCCCTCCTTCTCCTCTTGTTTT
ATTGTCTCCTTCCTTTTTCCCCTCCTTTTCTTTTCTTCTTCTATCTTCCC
TTCTCCTGTCCTTTCTTTCTTTGCTTTTTTCATGTCCTTGTTTCTTCCTC
CTTGCTTTTTTTTTTCTCTTCTTCCTCTCTCTCTTTTTCTCTTATTTTCT
TCTTTTTTTCCCCCCCTTTTTCTCTCTTTTTTTTCCTTCTTTCTTCCTTT
TTTGCTTTTCTTTCCTTTCTCTCTCTCTCTCTTCTATCTTTTCTTTTCCT
TCTTTCCTCTCCTCTTTTTTCTTCTTTCCCTCTCTTTTTTTTCTTTTTCT
TTCCTTTCCCCTTTCCTTTCCCCTTCTGTTCTTTTTTTCTTTCATCTTTC
TCTTCCCTTTTTTCCTTTCTTTTCCTTTCCTTCTTTTTCTCTTTCTTTTT
CTTTCTTTCCCTTTCTCTCTTCCTCTTTTCACCTCCTCCTCCTCTCTATT
TCTTCTCTTCTCCTTCTCCTTCTCGTTCTTTTCCCCTTTCTTTTCCTTCT
TTGTCTTTTCTTCTCTTTCTACTTTTTTTTTTTTCCTTCTTTTTTCCTCC
TTCTCCTCTCCTTTTCCCTCTCCTCCCTCTGTCTCCTCTCCCTTTTTTTT
TCTTCTCCTTTTCTCTCTTTCTCTTCTCTTTATTTCTCTTCTCTTTCTCT
TCCTCTCCTGCTCATCTTCTTCTTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_m06.b1 MSMg01no122_m06.b1 CHROMAT_FILE:
MSMg01no122_m06.b1 PHD_FILE: MSMg01no122_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:36 2005
         (737 letters)



>mm_chr2_73048307_73049443
          Length = 1137

 Score = 1243 bits (643), Expect = 0.0
 Identities = 655/659 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagatttaattcagggcttatgtgaaaattcctttattttaatgcagtagtttactca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 659 tgaagatttaattcagggcttatgtgaaaattcatttattttaatgcagtagtttactca 600

                                                                       
Query: 61  actttggcaattgtgtttggttgtaaaattcattttttatagaatgatcgttctttaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 599 actttggcaattgtgtttggttgtaaaattcattttttatagaatgatctttctttaaac 540

                                                                       
Query: 121 tgtatcaggtagagttgactgtatgaaacacagatcttttaaacaagaaaaaagaggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgtatcaggtagagttgactgtatgaaacacagatcttttaaacaagaaaaaagaggctt 480

                                                                       
Query: 181 actggaagaattgaaggagcggacagctagacatcagaaggctaagagctcaggtgaggc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 actgtaagaattgaaggagcggacagctagacatcagaaggctaagagctcaggtgaggc 420

                                                                       
Query: 241 aggcgtggatcagtcagtccacgtggaactcagctacaccagctcttgacctgcctgatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aggcgtggatcagtcagtccacgtggaactcagctacaccagctcttgacctgcctgatt 360

                                                                       
Query: 301 cttagctgggatacttattctgttgcacagattcctggacaagaaaggccaattagatct 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 359 cttagctgggatacttattctgttgcacagattcctgggcaagaaaggccaattagatct 300

                                                                       
Query: 361 gtctagctttgaatgggtttacaagaagtagattggaggttggggtagttttcttaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtctagctttgaatgggtttacaagaagtagattggaggttggggtagttttcttaagga 240

                                                                       
Query: 421 tagtccactggttgcaataagggcagtcaatttagaaattgttctagttagagttgctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tagtccactggttgcaataagggcagtcaatttagaaattgttctagttagagttgctgc 180

                                                                       
Query: 481 tgttctgatgaacacccacaaccaaaagcaacttgtggaggaaagggttaacttgggtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgttctgatgaacacccacaaccaaaagcaacttgtggaggaaagggttaacttgggtta 120

                                                                       
Query: 541 tgtattctgaatcgcagtccactgaaagaagccagtgtgaacacaaactagatgggaacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgtattctgaatcgcagtccactgaaagaagccagtgtgaacacaaactagatgggaacc 60

                                                                      
Query: 601 tggaggcgggagctgatgcagggaccatgcaggggtgctgcttactggcctgcttcaga 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  tggaggcgggagctgatgcagggaccatgcaggggtgctgcttactggcctgcttcaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1137
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1127
Effective search space:   819329
Effective search space used:   819329
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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