Query= MSMg01no122_m14.b1 MSMg01no122_m14.b1 CHROMAT_FILE:
MSMg01no122_m14.b1 PHD_FILE: MSMg01no122_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:39 2005
(800 letters)
>mm_chr2_142432122_142433321
Length = 1200
Score = 1454 bits (752), Expect = 0.0
Identities = 788/800 (98%)
Strand = Plus / Plus
Query: 1 ctgcaggcatttcatgcatgtggtaaacagacctaaaaattggaaaaccatacactcaca 60
||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 201 ctgcaggcatttcatgcttgtggtaaacagacataaaaatgggaaaaccatacattcaca 260
Query: 61 taaactaaaaaataaatcagcctcaaaaataacattattaaaggtctcacagtcataata 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaactaaaaaataaatcagtctcaaaaataacattattaaaggtctcacagtcataata 320
Query: 121 tactatgtgaatttttaagaaacaacatgcattatgtatttggccaaggcaaacctagag 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tactatgtgaatttttaagaaacaacgtgcattatgtatttggccaaggcaaacctagag 380
Query: 181 gccttctgaagacagtgtttctctctaaattgttcatacagtgagtcccctgctttcctc 240
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 381 gccttctgaagacagtgtttctctctaaatagttcatacaatgagtcccctgctttcctc 440
Query: 241 caggtccttttatcaccctatgtatacatcttttggcttgctccatgttaactgggggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtccttttatcaccctatgtatacatcttttggcttgctccatgttaactgggggaa 500
Query: 301 attatctaagatactgaggggtctaagtatctctgctgcaatgtagaaagtggatcctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatctaagatactgaggggtctaagtatctctgctgcaatgtagaaagtggatcctta 560
Query: 361 aatttgccccaatatctttcatatttcccaaatctcttacttctaatctagaaattaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttgccccaatatctttcatatttcccaaatctcttacttctaatctagaaattaata 620
Query: 421 caaaatagaagatctatactaaagaaaaaagacttttatatactttcattttacattttg 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaatagaagttctatactaaagaaaaaagacttttatatactttcattttacattttg 680
Query: 481 tgtatcaaagatgactcaattatttttaaaaactggcacatggcatttccataagcgatt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 tgtatcaaagatgactcaattatttttaaaaactggcacatggcatttccataagctatt 740
Query: 541 tgtcaccaggcttaagggacagaagaattctaatgtgtactctcgttggaagtagagatt 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 tgtcaccaggcttaagggacagaagaattctaatgtgtactctcattggaagtagagatt 800
Query: 601 tattcagcatttctaggtaatacaccagcacactgagcttatcatcaattgcaggcttca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattcagcatttctaggtaatacaccagcacactgagcttatcatcaattgcaggcttca 860
Query: 661 tagttttaactagctgtgagaaacacagacacccattatgtagagaaatgtttcaggaac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tagttttaactagctgtgagaaacacagacacccattatgtagagaaatgtttcaggaac 920
Query: 721 acaactaagttatcagttcccctcagatcagcacctcaggacacagtcccccaccccgtg 780
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 921 acaactaagttatcagttcccctcagatcagtacctcaggacacagtcccccaccccgtg 980
Query: 781 ctccccttccagatcagcac 800
||||||||||||||||||||
Sbjct: 981 ctccccttccagatcagcac 1000
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 800
Length of database: 1200
Length adjustment: 10
Effective length of query: 790
Effective length of database: 1190
Effective search space: 940100
Effective search space used: 940100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_m14.g1 MSMg01no122_m14.g1 CHROMAT_FILE:
MSMg01no122_m14.g1 PHD_FILE: MSMg01no122_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:39 2005
(768 letters)
>mm_chr2_142522997_142524163
Length = 1167
Score = 1236 bits (639), Expect = 0.0
Identities = 652/659 (98%), Gaps = 7/659 (1%)
Strand = Plus / Minus
Query: 1 ggagatagagtgtggttttgttacttcc---accctacccctcctctgatacacacatcc 57
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 655 ggagatagagtgtggttttgttacttccaaaac---acccctcctctgatacacacatcc 599
Query: 58 aaagccttttaagtatatagagaacgttgtgaaaattactatcaccacttgaccccaact 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaagccttttaagtatatagagaacgttgtgaaaattactatcaccacttgaccccaact 539
Query: 118 ttaactatgggtctctcttgggtgaaaaaaaatcttgaaaatcccataatattcttctaa 177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 538 ttaactatgggtctctcttgggtg-aaaaaaatcttgaaaatcccataatattcttctaa 480
Query: 178 aacctcatcaatactatttctacttttcattttttttagctaatataatttatattactt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aacctcatcaatactatttctacttttcattttttttagctaatataatttatattactt 420
Query: 238 gccatgactcttttgtcatatatgtttgattaaacaaacaaataaacagaattaagtcat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gccatgactcttttgtcatatatgtttgattaaacaaacaaataaacagaattaagtcat 360
Query: 298 gaagaactgagactaaaattgaagatgctgacagagggatataatgattgagaacaggaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaagaactgagactaaaattgaagatgctgacagagggatataatgattgagaacaggaa 300
Query: 358 gcaatacaaaagttatctgttattttaacaaagactgtctacctcaaacagacagacttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcaatacaaaagttatctgttattttaacaaagactgtctacctcaaacagacagacttc 240
Query: 418 cataattttaccatgctacaaataatggcctttagggtttgtcttagttagggtttctat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cataattttaccatgctacaaataatggcctttagggtttgtcttagttagggtttctat 180
Query: 478 tgatgcgataaaaacaccatgacaaaaagcaagttgaggaggaaagggttagttcagctt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgatgcgataaaaacaccatgacaaaaagcaagttgaggaggaaagggttagttcagctt 120
Query: 538 gtacttccagatgatagtccactactaaaggaagtcaggacagaaacttaagcagggctt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gtacttccagatgatagtccactactaaaggaagtcaggacagaaacttaagcagggctt 60
Query: 598 caacctggagatagtagctgatgcagaggccatgtgctgcttactggcctgctgcacat 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 caacctggagatagtagctgatgcagaggccatgtgctgcttactggcctgctgcacat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1167
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1157
Effective search space: 877006
Effective search space used: 877006
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
