BAC Information

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BAC

Clone NameMSMg01-123C02
Chromosome2 (Build37)
Map Location 94,708,152 - 94,708,424
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123C02.T7 (MSMg01no123_c02.b1)MSMg01-123C02.TJ (MSMg01no123_c02.g1)
ACCAG332816AG332817
length1,3021,247
length of high quality
(start - end)
120 (137 - 256)276 (132 - 407)
definitionCHROMAT_FILE: MSMg01no123_c02.b1 PHD_FILE: MSMg01no123_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:25 2005CHROMAT_FILE: MSMg01no123_c02.g1 PHD_FILE: MSMg01no123_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACTCACTNCNAACTATTGCGCCCTATACACTACTAAGGGAGAGGATC
CGCGCAATTCTCCCTGAGAAATANCCCATTTAAGACAAGCACCTAAAAAA
ATGTTCCCCATCTTTAATCTTTCAAGGACCCCGCAAATCAAAACAACACT
GACATTCCACCTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCATTTG
ACAGCAGATGCTGGCAAGGATGTGAAGAAAGAGGAATTCTCCTCCATTGC
TGGTGGGATTTCCAGCTGATACAACCAATCTGGAAATCCGTTTGGCAGTT
CCTCAGAAAACTGGACATAGTACTACTGGAAAACCCAGCTATACCACTCC
TGGATATATAGCCAGAAGATGCTCCCACTTTTAATAAGGAACATGCACCA
CTATGTTCATATCATTCTTATTTATAATAGCCCGAAGCTGTAAAGAACCC
AGATGTCCCTCATTTTTTTAACGCACACCGAAACTGTGCCACCTTTACAC
AAAGAAGAACTACGCAGCTATTAAAATCAACGACTTTATGAAATTCCTAC
ACCAATACATGGATCTGGAGGATATCCCCCCAAGCGAGGTAACCCAATCC
CCCATAACCCACATGATATGTACTCACTGCACACCGCATATCAGCCCCTA
CCCTTACACTACCCCACACTGCCTTCGCCCCACCCCTGCCCCACCCACGA
ACCAATACCCACCCGCCACATCCCTTCCACCCCCCCCACAACCCCTTCCC
CAAATACCCCACGCCCCGACTTCCCCCCACCAATTTCCCCACCCCTACTC
CCGACATCCTCCCCCTCCCCTACACCCGCCCCCCTCTGCTCATACCTTCC
CCCATCCCACCCCCCCCACCCCCCGCCCCTCATCCCCCACATTCCCCCCA
CTAACCCCCCCCCACCCTCCCCCCCACTCTACCCCTCCCCCCCAACATGC
CCCTACCCCCCCCCCCTCCCCCACTCCCAACCCCTCTCACCCCCCCCTCC
CCCCACTCCCCCGGCTACCCACCTCCCCCCTCCCCTGAAACCCCCCTCCC
CACCCACCACCCCCCCCCCTTCTCTCCTCCCCCTCACTACCCTCCCTCCA
TTCACAACCCATCCTCTCCGTCCCTCTTCCCCCCAACTCCCCACCCCTCT
CCACTCCCCCCTACCCCACCCACTTCCTCCCCACCTCCCCCTCTCCCCTT
CCTCCTCACCCCCTTCCTCCCTCTCTCTCCTCCTCTCATCCACCTCCTTC
TTCCACTCCCTCCTTCCTACACTCCTTCCACTCTACACCTCTCAACCTCG
TC
ATATTACTTTNNCCCACACGCAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTCTTATTTCCTGTAAAATAGGTT
CTAGGGTTCGATGAGTCCTTTCAATACCCCGGCAACCAAGTTCTTCAGCA
TGCAAATTAGTGACAATTGAGAGTGTGGAGGAAACTCATTAAACCTCAAG
AACATGATAGAGATTAAAACACAGCATTAAAACGGGCTAATAATCCTATT
TGAGAAAGTAATTCATTGTGGAGAATAGAAATAAACAGTGTGAGCATATT
TGGGGCCTCTAGATATCCCAGCTAAGAAAGAACCCAGTTGTCTTCTTTTT
CCAATTGTTTTTTTCTAGATGAGTTATCAAGTGGGTAGTCTCAGATATGT
GAATACTTTTCCTCAAAACTGTACCAGAATTAGGAATATTCATGTGACTA
CTTTGGTATGCCTTTTCATTTAACTTTCTTGATTTTCTAAAGTGAATAAA
AATATTTTCAAAGCTTTTAAATCATATTTTTAATTTGTAGTGTCCCACAA
ACACATTCTTAGTCAGGCTTAATGTGGCCCACATCAAGCAATGGAAGTCA
GTGGACAACTTGAGGGAGTTGAATCTTCTTGTTTTTGTAATAAACGTTAT
TTTACTATTTTTTAACAAAATAAAATATGAGATGACTAAAGAGAAACCTA
TCCCATTGACCTTAGACAAGGCAAACAAACCGAAGAAAATGAGCCCCAAG
AGTAGTCCCTAACTATCAGAGACCCACTCATTCCCACCTTCTGGAATCCT
TATAAAATACCTCCATGAAAAGCTTTTTCCTAAGTGCAAAGGACCTGTTG
CAGACCTGAATCCACCTTGACCTATGTAACCCATATGGGCCTTTGTTTCA
TTTGAATTGGAAGGGGGCCTGGTTCCTCCCAGTGTACCTTCCCTTCATTC
CCTTCCTAACTTTTTACCTTCCCCTTCCTGTCCTTCCTCCTTCTGGGGGG
GGTTTCCCCCCGAATCCTCCCGAATGCGGCTAGAAAGTTCTTGAATGAAA
CCACTTATTCTCCTTGGGTCAAAGCCTTTTATTACTTTTTCCAAAGTGCC
CCCCCCCTGTTTTTTGCACATAATCGGCCCTGTGGCCCTGGGTGCGGCCC
CTCCCTCTTAATTTGGACTTCTCTCCTCTGTGGGCCTCTCCCAAGAAAGT
AACATGTTGTCTCCTCCTCCCCAATCCTATCTCCCCTATGGTACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_c02.g1 MSMg01no123_c02.g1 CHROMAT_FILE:
MSMg01no123_c02.g1 PHD_FILE: MSMg01no123_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:26 2005
         (276 letters)



>mm_chr2_94707952_94708625
          Length = 674

 Score =  474 bits (245), Expect = e-138
 Identities = 267/275 (97%), Gaps = 2/275 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaccaagttcttcagcatgcaaattagtgacaattgagagtgtggaggaaactcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaccaagttcttcagcatgcaaattagtgacaattgagagtgtggaggaaactcatta 260

                                                                       
Query: 61  aacctcaagaacatgatagagattaaaacacagcattaaaacgggctaataatcctattt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aacctcaagaacatgatagagattaaaacacagcattaaaacaggctaataatcctattt 320

                                                                       
Query: 121 gagaaagtaattcattgtggagaatagaaataaacagtgtgagcatatttggggcctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gagaaagtaattcattgtggagaatagaaataaacagtgtgagcatatttggggccttta 380

                                                                       
Query: 181 gatatcccagctaagaaagaacccagttgtcttctttttccaattgtttttttctagatg 240
           |||||||| ||||||||| ||||||||| ||||||||||||||||| ||||  |||||||
Sbjct: 381 gatatccctgctaagaaaaaacccagttctcttctttttccaattggtttt--ctagatg 438

                                              
Query: 241 agttatcaagtgggtagtctcagatatgtgaatac 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 439 agttatcaagtgggtagtctcagatatgtgaatac 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 674
Length adjustment: 9
Effective length of query: 267
Effective length of database: 665
Effective search space:   177555
Effective search space used:   177555
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)