Query= MSMg01no123_c24.b1 MSMg01no123_c24.b1 CHROMAT_FILE:
MSMg01no123_c24.b1 PHD_FILE: MSMg01no123_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:34 2005
(643 letters)
>mm_chr2_149073601_149074643
Length = 1043
Score = 930 bits (481), Expect = 0.0
Identities = 520/537 (96%), Gaps = 9/537 (1%)
Strand = Plus / Minus
Query: 1 gtttagcaaagaataagcatcctgaaccaactctcagaatttgactaatgcagctgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtttagcaaagaataagcatcctgaaccaactctcagaatttgactaatgcagctgtgaa 478
Query: 61 tctatgttctctgacattagtgttatcccatcctccctaaaactatccaagaaatgtgaa 120
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 477 tctatgttctctgacattagtgttatcccatcctccctagaactatacaagaaatgtgaa 418
Query: 121 tctattttgtttttcaccatttattttctatctagagtagaaacttcaagaaaactattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tctattttgtttttcaccatttattttctatctagagtagaaacttcaagaaaactattt 358
Query: 181 taggattcataattaactatactggaaaaatctagacttcctaacaccattcttactgtt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 taggactcataattaactatactggaaaaatctagacttcctaacaccattcttactgtt 298
Query: 241 gaaatatcaggaaaaattaaccaccaattcacaagataccatatattgttttttcccctt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 297 gaaatatcaggaaaaattaaccaccaattcacaagataccatatattgttttatcccctt 238
Query: 301 ataaagtattatgtttctcattttgaattatgtgtaa---cccctgattgtgt--gtttg 355
||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 237 ataaagtattatgtttctcattttgaattatgtgtaagtt----tgattgtgtgagtttg 182
Query: 356 tgtttatttgtatatctatttgtgtgcctttgtatatgtgtctatgtttgtgcttgattg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtttatttgtatatctatttgtgtgcctttgtatatgtgtctatgtttgtgcttgattg 122
Query: 416 tctgtttatagttattaacagtagaggatagtgttcctgtagaccttggatccacttaat 475
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 121 tctgtttatagttattaacagtagaggatggtgttcctgtagaacttggatccacttaat 62
Query: 476 ttgagttataaaatttgtcagttatctgacatgcatgctaagaaatgatctcaggtc 532
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagttataaaatttgtcagctgtctgacatgcatgctaagaaatgatctcaggtc 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_c24.g1 MSMg01no123_c24.g1 CHROMAT_FILE:
MSMg01no123_c24.g1 PHD_FILE: MSMg01no123_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:34 2005
(650 letters)
>mm_chr2_148918079_148919128
Length = 1050
Score = 1079 bits (558), Expect = 0.0
Identities = 627/650 (96%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 1 cttgatacactattcacctcgtgccttcctctttaaaattcctcctacacttcttagtgt 60
|||||||||||||| ||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgatacactatttacctcattccctcctctttaaaattcctcctacacttcttagtgt 260
Query: 61 ttcatcacaattcctaccaacaatttctggaactccgtcttagcttaaaaatttagattc 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ttcatcacaattcctaccaacaatttctggaactccatcttagcttaaaaatttagattg 320
Query: 121 accctggtttttataatggtaatgcctatatctgcctctcaaaaatgtggaaataccttc 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctggtttttataatggtaacacctatatctgcctctcaaaaatgtggaaataccttc 380
Query: 181 tttatttcttcagaaacatctaaatagcagtgtttaattacctgtgtccccagagttcag 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttcttcagaaacacctaaatagcagtgtttaattacctgtgtccccagagttcag 440
Query: 241 ggttatcattgagaccctaacggagatcaacttctttttcttcctgtaatttgttgctgc 300
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 ggctatcattgagaccctaacggagatcaacttcaatttcttcctgtaatttgttgctgc 500
Query: 301 tcataatatactttcaaatgatattaaagtaactaatgaaaggcagaacagacattttga 360
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 501 tcataatatacttttaaatgatattaaagtaactaatgcaaggcagaacaaacattttga 560
Query: 361 agctaaaacacaatagttctgaaaaagaaacctataactgatcaatgcttgcttataata 420
||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 561 agctaaaacgtaatagttctgaaaaagaagcctataactgaacaatgcttgcttataata 620
Query: 421 tttgtgaagaaaaatgaatggaattagagatattggggagggggatgactcaatattggt 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tttgtgaagaaaaatgaatggaattagagatattggggagagggatgactcaatattggt 680
Query: 481 ggcactgtgaaatatttatttatcaaatcagtgtggaaattcttcaaaaactaaagtaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 ggcactgtgaaatatttatttatcaaatcagtgtggaaattcttcaaaaactaaagttag 740
Query: 541 agctaacattcagctacatctctcctggcaataaatctaaatgactataaattctattac 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctaacattcagctacatgtctcctggcaataaatctaaatgactataaattctattac 800
Query: 601 actaacatacttgctaactcacatccatgatcattgctactttattctaa 650
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 801 actaacatacttgctaactcacatccatgat-attgctactttattctaa 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
