Query= MSMg01no123_h10.b1 MSMg01no123_h10.b1 CHROMAT_FILE:
MSMg01no123_h10.b1 PHD_FILE: MSMg01no123_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:14 2005
(271 letters)
>mm_chr2_131627099_131627769
Length = 671
Score = 439 bits (227), Expect = e-128
Identities = 260/271 (95%)
Strand = Plus / Minus
Query: 1 tttagctatgggaaaaaaatgtcaaggctatgcaaaacaaaaggaaagttaaaagagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tttagctatgggaaaaaaatgtcaaggctatgcaaaacaaaaggaaagttaaaagagaca 412
Query: 61 tggctgaagcttccacagtgtgtaaaacacaactggtcaactttaaggggcagagccatc 120
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct: 411 tggctgaagcttccacagtgtgtagagcacaactggtcatctttaaggggcagagccatc 352
Query: 121 tcattttgtagaagtgttatccacagtagtcaagatactgtagcagctgaaatacctacc 180
||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 351 tcattttgtagcagtgttatccacagtagtcaagatactgtagcaacggaaatacctacc 292
Query: 181 aacagaaaaccgtgacctcacagatttcaggccactctcagttgcccgagtttctcttcc 240
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 291 aacagaaaaccgtgacctcagagatttcaggccactctcagttgcccaagcttctcctcc 232
Query: 241 tctggaggggcagtacctcacagcagcggat 271
|||||||||||||||||||||||||| ||||
Sbjct: 231 tctggaggggcagtacctcacagcaggggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_h10.g1 MSMg01no123_h10.g1 CHROMAT_FILE:
MSMg01no123_h10.g1 PHD_FILE: MSMg01no123_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:14 2005
(321 letters)
>mm_chr2_131532595_131533320
Length = 726
Score = 596 bits (308), Expect = e-175
Identities = 320/326 (98%), Gaps = 5/326 (1%)
Strand = Plus / Plus
Query: 1 tttaacatttgacagatgtctataccccccagcttagctctgctctctggtcagcaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaacatttgacagatgtctataccccccagcttagctctgctctctggtcagcaagca 260
Query: 61 gcctgtgatttcctaataagtatgaagcatttccatagaaagcctacatgaactagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgtgatttcctaataagtatgaagcatttccatagaaagcctacatgaactagaata 320
Query: 121 tccaagacccagagaga--taatgccagttctgagagcagtgatgagctgatacggggac 178
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagacccagagagagataatgccagttctgagagcagtgatgagctgatacggggac 380
Query: 179 cagccttgataagcaaggggttcactggagtgactatgatactttctgatcaggcttttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccttgataagcaaggggttcactggagtgactatgatactttctgatcaggcttttt 440
Query: 239 tttttcctctatcttgctttcgcttgtgaggaggtgctctgaaactt---catgatgtgg 295
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tttttcctccatcttgctttcgcttgtgaggaggtgctctgaaacttgttcatgatgtgg 500
Query: 296 acatcatctgagggtggttcctaggg 321
||||||||||||||||||||||||||
Sbjct: 501 acatcatctgagggtggttcctaggg 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 726
Length adjustment: 9
Effective length of query: 312
Effective length of database: 717
Effective search space: 223704
Effective search space used: 223704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
