BAC Information

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BAC

Clone NameMSMg01-123H23
Chromosome2 (Build37)
Map Location 138,812,769 - 138,812,955
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123H23.T7 (MSMg01no123_h23.b1)MSMg01-123H23.TJ (MSMg01no123_h23.g1)
ACCAG333085AG333086
length1,1581,496
length of high quality
(start - end)
187 (203 - 389)51 (280 - 330)
definitionCHROMAT_FILE: MSMg01no123_h23.b1 PHD_FILE: MSMg01no123_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:19 2005CHROMAT_FILE: MSMg01no123_h23.g1 PHD_FILE: MSMg01no123_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGTCTCCGNCCAGCATGGGCGCTAAGACTCCTATGGGAGAGGATCCGCG
GAATTCTATAACCCTATNNAAACCCCTAAAACCCCCCAANNGGGANCNGG
NNNAGGNNNGGGCCCTTTAAAAGCCCCTTCCGAGNGGCACACNNCCCCCC
AANTGGTCAAATTCTTTTCACATAGTGCCGCTCCATGATGACATAGCATT
CCAATATATACACCTATGGGGACATTTTTATTCAAACCAACACTGTAAGC
GTGTTAGTCATATGAATGTGAAAGCAGATGTTGTTTGTTGCTCATGGAAA
AACTCATAGGTCAATGACTCTGAATGCTGATGTTTTACAAACAAGAGAAG
GAGTTTTATCAGAAGGAGAGAACATCTCAACTCTCATCTGCCGAGAGAAA
CATCTTTTTTTTTTTTCCCCGCAAGACAACGCACCCGCGACAACGAAGGA
AACCAGCTTTTTTTTTTTCTCCCCCCACAGATTACGCCCTCCCCCCCCCA
AAAAAAAGGAGGGGGTCCACCCATCTCAAAAATTTTAACCTGCAATTGCT
CCCGTACTAAGGAAATACAAACAAATTGTGGCAGCACACACTGTAGAAAA
AGCCCTCCAGAGACTGCTCCTGCCGGGGGATCCCTCCCCTATACCGCGAA
CCATCTCCGATTGATTGCCTATCCGTGCTTGCCTGTCTCGGCACCTGATA
TAGATGTCCTCCTGCGGGGCCTCCTGCCAGAGCCCTATCCCCCCCTCACG
CTGGTTGCCTTGCCCCCCCCCCCTTCCCTCCTTCCAACGCGCCCGCCCCA
TGGTTTTTTTTTTTTTTTTTCGCGCCCGACAGGTACCCTCATCCTCTCTT
GGCCTCTCTTCCCATGGTATTACCCTCGCATCTCTCCTCTTCACGCTTAA
CTCCCTCCCTCCATCTTTCCAGTTCTCTTCCTCCCCCCCCCCCCCCCTTC
ATCTCTTCCCTCCTCTGGCCCTCTCTCTTGTTCTTCCCTCTCCTTCCTCT
TCTTAATCACTGGCCTTCTACTCTCGCCAAATCCACTTGTGTCCGTGGCA
GCCTCTCTCGTGCCCCCTCCTTTGTTATCCCTCTCTCCCTTGCTCCTTCA
CCTCCTTGTCCCCCGCTACTCTGTCTTCGGCGTCCTCTTCTACCCCGCTT
TGTACACG
GACCTCCCTAATTGATGGCAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCACGGATAGATTGCAAGAG
CTGGGGGACAAGAGTGCTTTAAAGCCCCAGATGGATGGACAGCCATTAAA
AAAACAAAACAAAACAAAAAAAAACATAAGGATAGAAAGAGTAAGCAGAG
AAAGGTGTAGATACACCAAGGAGAAGTAAAAATTCCATGCATGGATAAAT
TGCAAGACGCAAGAGACTAGACTGAATATATATATATATATATATATATA
TATATATATATATATGTATATATATATATATATACATCTACCTTCATCCT
CCTCCCCCCCTACCCCCTCCCTCCCCCCGCTCGACCCCTCCCACCCCCCC
CCCCCCCCCCTCCCCTTTTTTTTTCCTCCCCCCCCCCCCCCCCCCCTCCT
ACTTCTACCCCCCTCCTCCCTCCCTTTTTTTTTTTTTCCCCCCCCCTTTT
CCCGTCGTTCCCCCCCCCTCCAAAAAAAAAAGGGTTGTCTCTTCTCTCTA
CCTCCTCCTCCACCCTCCTCCCTCTCCTTCCCCCCTTCCTCCCCTATCCC
CCCCTCTCTCCCCACCTTCTTTCCTCCCTTCCCCCCCCCCCCTCCCTCCT
CCCCCCTCCCTCCCCCCCCTCTCTTCCCTTCCCTCTCCTACCCCTCCTCT
CCCCTTTCTCCTCCCTCTTCTTCTCCCCCTCTTCTCCCTCCCTCTCCTCC
CTCCCCCTCTCCCTCATCCTCTTCTCCTCACTCTCCTCTCTCCTTCACTT
TCCTCTCTTCCCCTCCTCCTTCTCCCACTCTCTCCCCCTCCTCTCCCCTC
TCACCCCCCTCCTTCTCCCCTCCCACCCTCCCTCCCTCCCCCCCTCTCCC
TCTCCCTCTCCCTTCCCTCACCCTCTCCTCCCTCCATCTTCCCCCTTTTT
CCCTTCCTCTCTCCCTCTCCCTCTCCTTCCCTTCTTTCCCCCTCCCCCCT
CTCTCCCCTCCCCTCTCTCTTTCTCTCCTCCCTCTCCCCTTCCTCTCTCC
CCTCTCTCTCTCCCCTCTTTCTCCTTCCTCTCCCCCTCCCCTCACCCCCC
TCTTTCTTCCTCCTCTTCCTCCCCTCTCCCTTCTCCTCCCCTCTACCTCC
CTACCTTCTCCCCATCCCACTCTCCTACCCCCAGCTCTGCCTCCCTTTCC
TCCCCCCTCCATCCTCCCTTCTTTCCCCTTTCCTCTCCCCCCTCTTTCTC
CACCTCCTCTCTCCCCCTCCCCTCCCTTATCTCCCTCTCTCCCTTCTTTC
TCTCTCCTCTCCCTTTCTCTTTCCCTTCCCTCTCCTCTCTTCACTCTCCC
TCCNTCTCTTCTCTTACTTCCCTCCTTCCCGCGTCACCTCCCTCCTTCCT
TACCATCTCNCTCCTCCTCCCTCTCTTCCCACTTCTCCTCGCCACCTCCT
CCTCTCTCCCTCTTTCCCTCCCTTTCCTTCTTCTCNCTCATTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_h23.b1 MSMg01no123_h23.b1 CHROMAT_FILE:
MSMg01no123_h23.b1 PHD_FILE: MSMg01no123_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:19 2005
         (187 letters)



>mm_chr2_138812528_138813114
          Length = 587

 Score =  333 bits (172), Expect = 5e-96
 Identities = 184/188 (97%), Gaps = 2/188 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatatacacctatggggacatttttattcaaaccaacactgtaagcgtgttagtcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aatatatacacctatggggacatttttattcaaaccaacactgtaagcgtgttagtcata 369

                                                                       
Query: 61  tgaatgtgaaagcagatgttgtttgttgctcatggaaaaactcataggtcaatgactctg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 368 tgaatgtgaaagcagatgttgtttgttgctcatggaaaaactcaaaggtcaatgactctg 309

                                                                       
Query: 121 aatgctgatgttttacaaacaagagaaggagttttatcagaaggag-agaacatctcaac 179
           ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 308 aatgctgatgttttacaaacaagagaaggagttttatgagaag-aggagaacatctcaac 250

                   
Query: 180 tctcatct 187
           ||||||||
Sbjct: 249 tctcatct 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)