BAC Information

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BAC

Clone NameMSMg01-123H24
Chromosome2 (Build37)
Map Location 119,073,491 - 119,141,296
singlet/doubletdoublet
Overlap geneSpint1, Rhov, Vps18
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d
Downstream geneLOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123H24.T7 (MSMg01no123_h24.b1)MSMg01-123H24.TJ (MSMg01no123_h24.g1)
ACCAG333087AG333088
length1,2261,264
length of high quality
(start - end)
371 (90 - 460)277 (133 - 409)
definitionCHROMAT_FILE: MSMg01no123_h24.b1 PHD_FILE: MSMg01no123_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:19 2005CHROMAT_FILE: MSMg01no123_h24.g1 PHD_FILE: MSMg01no123_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,073,491 - 119,073,861)(119,141,020 - 119,141,296)
sequence
NGGGGTTTTNNNNNNAACACTCGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCATCCTGTTGAAAAGTGACTTTAGTTTGTCCTCTGGCCT
CCCTGTGCACATGCCATGCACCTAAGTAAACAATGTACCCAGGCGTATCT
TTAAAATAGAGTCTAAGTAGTAGTTCTCTTGGAGCTGAAGATTGCTATCC
CTTTGTCTGTCTTGCCTTTAGTGAGGCGACATCTGCCCTCAGCCTGGCGT
AGGGGGTACTTAGCTATCGTCCTGCGGGGCCTGATGGGTGGCAGCAGGGT
GGCTCTTTGGGCTCACTTGCCCCTTCGTATGCTCCCTTACCACAGGGTAC
TGTGCAGAGCTGCCAGACACTGGGTTTTGCAAGGAGAACATCCCACGCTG
GTATTACTACCCATTCAGTGAACGCTGTGCCCGATTCACCTATGGTGGTT
GCTATGGGAACAATAACTACTTTGAGGAGGAACAGCAGTGTCTTGAGTCC
TGACGTGGCATCTCCACCGAGCAGAGTGGCAGTAGCGGGGTGAAGGGGAA
GATTTGGCTAGGCCTGGGCTGGTCCCTCCTCTATAAGTGACTTGATAGCC
ATGGAGAGGGTGGCAGGTGGCTGTGGTACTGGAACAGGTGAGTCTAAGGA
CTTACCCTAGTGCCGACTGGTTTCTCTATGCCACTTTGCAGAGAATGATG
TGTTTGCTCTTCCGATGGAAAGCTCCATTCCCCTCTGTAGGTAAGCCAAT
CCTTGTCCTGTCTCCCGTGTGTATTTGTTTGCCCTCATTTCCTGATCTTC
TCTTCCTGCTATCTGCCTTGCTAATGGCTCCTCCCTTGTCCTCTATACTA
CTTCTGAATTTTTCTTCTTCATTTGCCTCTTGGTCTTCTTGATCTCCCTT
TCTTCTTTTTACTTGCCCTCCTCTCTCTTCTTTTTTTTTTCTCGCCTCTC
TCTTCATCTTTCTTTCTCTTCCTCCCTTCTTTGCTTCCTTTTTACTATTC
TCCTCTTCCTCTCTCCTTCTTTTTTAACTATCATACTCTCTCTCTTTTAT
TCTCCCCCTTTCTCTTTCTCCTCTCCCTCCCTTTTCTTTCTCACTCTTCT
TCTTTCTCTCCTCGTCCTTCCTTCCCTCCATTCTCGCTTTCTCCCTCTCT
ACTCTCTTATTCCCTAATCCCTTCCCTCCTTCTTTATCTTATATCTCCTC
TCTTCCTCTCCTCTTCTCTCCTTTCC
NNGGGGTATNNNNNNCGAGATGTCAGCCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGCCTAGGTTTCAA
CACTTTGCAAGACTATCCCAGTCTCTTTAGACGCTTTGGTCATAGAAAGC
ACATTTGCTGGTTGATCCATAAGTTCTACTGTGATCAGTGTGGGCAGCTG
GTATAGGAGAGCTGTTTGTTCTGACCCTCCATGATGTTTTCTGGAATGGA
ACAGCAGAGGAAGTGTCCACCAATCTCTTGGGTCCAAGATATCTCTCCTG
CGTTTAAGGACCTGCCAGCTGCACCTGCTTGGCACTCAGGACAGGGCCAG
CTTAAGGATATGGGAAGTCCTGGTCTGTTCCCAGGCAGTCAGAGTGAGGC
TGCAGGGTCAGTCTTTCTCAGCCTCACTGGGGTGCCAGGCTCAGGTCAGC
CTGTCACAGTGGTTTTTTCTCCCCACGCTGAGATCATCGCTCTCCCTGAT
AAAATAGAGGGGCAGTTGAGCTCACTACCATTGCCTTCTGGGGGCCATTG
TTGTCTCCCCGCCCCCTCCCCAGGCTCAATGACCTGTTTGTTGGCATGTC
CGGTGAGGGTAAGTGAGGGCGCCTATGGCGCGACCATACCAATGGGGATT
CCGTCCATCGCGANGCGACTGCGNTAACCCCNTCGGCTTTGTCCTGCCGA
CCCTTTATTCCCCACCCTTTACGAGTCCGGACCCTCCGGCGTAAGGCCCT
TGTACCATAACAACCACCCCTTGCCCCCCCCCTTGTTCGTATGCCCAGGC
CTGCTTGCTCGTCTTGCCCCCTTCCCACTTTACCCCTGGCTTACTCCCGT
CCTCCCTGTTACATTTCCGTAAAAACCGTCTCTCCTTCATGCACTCCTTC
CCCGCCAGCCTCCATCTTCTTTTCCCCCCAATTCTCCACTCTCTCACCTC
TCCTCTCCACCCCCTGGTACCACTCCTTCCCCCTTCTTCCCCTTCCATAA
TCCCTTGCATGTCTCTCCCTCCTCCCAATCCCCCTTTATCCCCCTCCCTC
TTTTTTAAACCCCCCCCCGCACCCCTCCCCCTCGCCTTCCCACTCCTCTC
CTCGCTCGCCTATTCCTCCTCCATTACATCTCCCCCCCTCTCCGTCCACC
TACCTACCCTTCCTCTCTCCTCTTCTTCCTTTCCCCTCCTCCTCTCTCCT
GCTCTCTTCCTCCCCTCCCCACCCTTCTTCTTCTTAATCTCCTCTTCTCT
CTCTCGCTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_h24.b1 MSMg01no123_h24.b1 CHROMAT_FILE:
MSMg01no123_h24.b1 PHD_FILE: MSMg01no123_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:19 2005
         (371 letters)



>mm_chr2_119073291_119074061
          Length = 771

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctctggcctccctgtgcacatgccatgcacctaagtaaacaatgtacccaggcgtatc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcctctggcctccctgtgcacatgccatgcacataagtaaacaatgtacccaggcgtatc 260

                                                                       
Query: 61  tttaaaatagagtctaagtagtagttctcttggagctgaagattgctatccctttgtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaatagagtctaagtagtagttctcttggagctgaagattgctatccctttgtctg 320

                                                                       
Query: 121 tcttgcctttagtgaggcgacatctgccctcagcctggcgtagggggtacttagctatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgcctttagtgaggcgacatctgccctcagcctggcgtagggggtacttagctatcg 380

                                                                       
Query: 181 tcctgcggggcctgatgggtggcagcagggtggctctttgggctcacttgccccttcgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgcggggcctgatgggtggcagcagggtggctctttgggctcacttgccccttcgta 440

                                                                       
Query: 241 tgctcccttaccacagggtactgtgcagagctgccagacactgggttttgcaaggagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcccttaccacagggtactgtgcagagctgccagacactgggttttgcaaggagaac 500

                                                                       
Query: 301 atcccacgctggtattactacccattcagtgaacgctgtgcccgattcacctatggtggt 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcccacgctggtattacaacccattcagtgaacgctgtgcccgattcacctatggtggt 560

                      
Query: 361 tgctatgggaa 371
           |||||||||||
Sbjct: 561 tgctatgggaa 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no123_h24.g1 MSMg01no123_h24.g1 CHROMAT_FILE:
MSMg01no123_h24.g1 PHD_FILE: MSMg01no123_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:19 2005
         (277 letters)



>mm_chr2_119140820_119141496
          Length = 677

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctttggtcatagaaagcacatttgctggttgatccataagttctactgtgatcagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gctttggtcatagaaagcacatttgctggttgatccataagttctactgtgatcagtgtg 418

                                                                       
Query: 61  ggcagctggtataggagagctgtttgttctgaccctccatgatgttttctggaatggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggcagctggtataggagagctgtttgttctgaccctccatgatgttttctggaatggaac 358

                                                                       
Query: 121 agcagaggaagtgtccaccaatctcttgggtccaagatatctctcctgcgtttaaggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agcagaggaagtgtccaccaatctcttgggtccaagatatctctcctgcgtttaaggacc 298

                                                                       
Query: 181 tgccagctgcacctgcttggcactcaggacagggccagcttaaggatatgggaagtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgccagctgcacctgcttggcactcaggacagggccagcttaaggatatgggaagtcctg 238

                                                
Query: 241 gtctgttcccaggcagtcagagtgaggctgcagggtc 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtctgttcccaggcagtcagagtgaggctgcagggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)