Query= MSMg01no123_i07.b1 MSMg01no123_i07.b1 CHROMAT_FILE:
MSMg01no123_i07.b1 PHD_FILE: MSMg01no123_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:22 2005
(335 letters)
>mm_chr2_45474671_45475406
Length = 736
Score = 627 bits (324), Expect = 0.0
Identities = 333/336 (99%), Gaps = 1/336 (0%)
Strand = Plus / Minus
Query: 1 ataaacaagaatggataggaaagtccacaggcagagtgtatccag-aaaaaaaaaaaaaa 59
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 536 ataaacaagaatggataggaaagtccacaggcagagtgtatccagaaaaaaaaaaaaaaa 477
Query: 60 aaacagaattcaagcctagagcttattggatgagactccagagccttggttattaaccac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaacagaattcaagcctagagcttattggatgagactccagagccttggttattaaccac 417
Query: 120 agcatagaggcacataagttattagttccataagcaactgggaactatgagtatattaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agcatagaggcacataagttattagttccataagcaactgggaactatgagtatattaat 357
Query: 180 ttgattcaaaaagctaagtatcacagcaagatcagaattttcaacatgaaccaaataacg 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgattcataaagctaagtatcacagcaagatcagaattttcaacatgaaccaaataacg 297
Query: 240 aagaacacagtcattgcaaggacctcatcatatctattttgcttttagttgaaactggtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aagaacacagtcattgcaaggacctcatcatatctattttgcttttagttgaaactggtg 237
Query: 300 aaggagagaagaagtggataatgagcaagctgagga 335
|||||||||||||||| |||||||||||||||||||
Sbjct: 236 aaggagagaagaagtgaataatgagcaagctgagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 736
Length adjustment: 9
Effective length of query: 326
Effective length of database: 727
Effective search space: 237002
Effective search space used: 237002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_i07.g1 MSMg01no123_i07.g1 CHROMAT_FILE:
MSMg01no123_i07.g1 PHD_FILE: MSMg01no123_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:22 2005
(614 letters)
>mm_chr2_45380004_45381017
Length = 1014
Score = 1077 bits (557), Expect = 0.0
Identities = 599/615 (97%), Gaps = 5/615 (0%)
Strand = Plus / Plus
Query: 1 ttaaagctatattttaattatttttatttctatgctaataaacctgtgaaattaacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttaaagctatattttaattatttttatttctatgctaataaacctgtgaaattaacaaat 260
Query: 61 accagtgtcttatggtgcatacaatttaaagaaacatgctttgatctttcaagtttcaga 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagtgtcttatggtgcatgcaatttaaagaaacatgctttgatctttcaagtttcaga 320
Query: 121 gaagcttttcatagcttttgaagtttcaccatatacatattaggaaataaatttaacatt 180
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aaagcttttcatagctcttgaagtttcaccatatagatattaggaaataaatttaacatt 380
Query: 181 tatttatctatttatttatcatgtatgtgtattcagacattcatatgccattgtgtgtgt 240
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 381 tatttat----ttatttatcatgtatgtgtattcaggcattcatatgccattgtgtgtat 436
Query: 241 -gtagatctgtgaaaatctgtcaggagtcagttcttccctgatgcatgtgagttctgagg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgtagatctgtgaaaatctgtcaggagtcagttcttccctgatgcatgtgagttctgagg 496
Query: 300 gtgaaactcaggttatcaaccttggcagtgagtttatttacccactgcaccatcttgcca 359
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 gtgaaactcaggttatcaaccttggcagtgagtccatttacccactgcaccatcttgcca 556
Query: 360 gcccctcaaatttgaataattttaggttggtaattttcctgtccatgggtactttgatta 419
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtgcctcaaatttgaataattttaggttggtaattttcctgtccatgggtactttgatta 616
Query: 420 aaatgttacagtcttaaaatgaagcatcttattgattgatggtttcctttaatccatgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaatgttacagtcttaaaatgaagcatcttattgattgatggtttcctttaatccatgcc 676
Query: 480 ttttctacatacttgctttgatcacttttattgaggttagattacctgatcattggttat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttttctacatacttgctttgatcacttttattgaggttagattacctgatcattggttat 736
Query: 540 taataagcaatttggtgaaactggtgtgtaaccagtgtttgaatgacttggctgatgatc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 taataagcaatttggtgaaactggtgtgtaaccagtgtttgaatgacttggctgatgatc 796
Query: 600 tctatataaattggg 614
|||||||||||||||
Sbjct: 797 tctatataaattggg 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
