BAC Information

Click to search

BAC

Clone NameMSMg01-123M07
Chromosome2 (Build37)
Map Location 146,141,929 - 146,267,102
singlet/doubletdoublet
Overlap geneA230067G21Rik
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123M07.T7 (MSMg01no123_m07.b1)MSMg01-123M07.TJ (MSMg01no123_m07.g1)
ACCAG333290AG333291
length1,2681,263
length of high quality
(start - end)
336 (121 - 456)598 (127 - 724)
definitionCHROMAT_FILE: MSMg01no123_m07.b1 PHD_FILE: MSMg01no123_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:56 2005CHROMAT_FILE: MSMg01no123_m07.g1 PHD_FILE: MSMg01no123_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,266,767 - 146,267,102)(146,141,929 - 146,142,526)
sequence
CCCCCGCGACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGA
ATTCCAGCCCTATCTGAGTTCCTTTCCTGACTTCCTTAAGTAATGAACAG
TGATGGGCGTGCCCTTAACAGTTAAACTCCTATTCTCTCCTACTTGCTTT
TGATCATGGTGCTTATGGCAATTGAAACCCTGACTAAGAGGATACAGAAA
GTCAAGTTTCATTGCTGCCTGGAGAAACCACACATTTGAGAGAGAAGGTG
ATGGGAAAGGAAGCACTTTATTGGCAACGAGGTGACAAGTTGGAAGATGA
GGACTCTTGTGTGTCTTAGAAAAAGAAGAAGCCATGTTGAGGGGTTGCAG
GTATAAGACTCCATAGATACTGATTTTGGGTATGGGCATAGTGGGTAGGC
TTTTTATTTTGGCAGGAATGATACTATTTCTGAATTTTGGTTAGTTTGCT
TTTCTGTCTCACCCACCGCTGTTATCCATAAAAGGTTCTGGATTCGTTCT
GCAAATTTAAAGAGAAGTTGCTGACTAAATAGCATTATGTCCCATGCCAT
TTTATGTCCTTTCCCCAGGAATAGCTAACTCGGCAGTTACAAAAGTGTAT
AGCAGGCATGTTTCACCCCAGGGTAGCCAAAGGCAGCTGTCCCTGGAGAA
GCAGGAAAGATAGCTGAAAGAACAACTTTCCCTGAGCAAGACAGTGAAGT
GAAGCTTTTCACAGAGCAAAGAGTTTAACCCACTAGGTGACTTCAGCCAG
AGCTTTCCTCTGTATCAAAGGTGGTGGGAGACCTGCAGTTGACTGCCCAG
CTGTGTGACCCCTCAACTTATTGATTAATCTAGCCCTGAAGCCCGACTAA
ATTAATTAGATTTTTTCTCTCTGTAGCATTACTATATATTCCATTTGCTA
TGCATCCCGGCAAATTGATAGTTTATTAAAACCCTTTCCTGCTTTCCAAA
TTTAATTTTTAATTAATGACATTTCCTTTTTGGCCCTTGCTTCCCCCTAA
TCCCCCTCTTAATTATCTTCTTTTCCACCCCCCCCCCTCCCCATGTTCCT
TTTTACAATTCCCATTTTCTTTTTTCAACTGTACTTTCCTTCTTTAAAAG
GTAAATTTCCCCCTTTCTCGTTTATTTCCTTGCAATTTATTTTCTCTACA
TCGCGTGCACCTCCACTAAAATTTCTCTTCCCTTCCTTATATCCACACTC
GTTGGAAAGCTTTCCTGTATATATATCCCCACTTCTCTCCTTCTTATTCT
CTAAACCTATCTTATGCA
TTTTAAAAGATGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTTCAGTTTTCTCTCTAAGGAAGATAGAC
GCCTTCAAAAGACCCTTTAGGGAACTGGAGAATACGTCTAACCTACATTT
GCGTGTATATGGTATGCTTGTGGATGTAGGCACATATGTATATGTATGTA
TATATATGCAGGTAGAGGAGACCAGAGAACAACACTGGTTGTCTTGCTCT
ATGCATGACAAATATACTTAAAAGTACCCAATAGTGGTAACATAAATTCA
TGAAGACCTGAATAAATTCAAAGTACAATCTTCATGGGCTGGAAGTTTTT
ATACTTGTTAAGATGTCAATTCTTCTGAAATCAAAATTTAGATTCTAACA
CAAACTCTTTTTTCATACAGAAATGGAAAGACAGAAATTAGCTATGACAA
TTATGAGATGATTTATACTGAGTTTGAGGAATAAATATAAAATTACAGTA
ATTAAGATATTAAAACATTAATATCAGGATAGATAAATTGACAGATGAAA
ATATACAGCCCAAGAATAGAAGCACATATTATGGCAACTGTTCCACAGTA
AGGCAGGACATTTCTGGGGAAAGGAAGTTTGTTCCGATAAAGACTCTGGA
ACAAAGGGAGAGGGGTAAGAAAAAATGAAACCTGATCTCTATTTCATCAC
ACACAAAAATCTGAGCTGGATTGTTAACAGAAACATTAATACTAGTACTA
AAAAGGAGCGGACGAGATGGCTCAGTAGGGAAGGGCACTTGCTGCCCTGA
CTGATGGCCAGCGTTGATTTCCACAGCACACCTGCAGAAGGGTGAACTGA
TCTTTACAAGCTCCCCCTGACCTCCATGATTGTGCCATGTCCTGCGCTAG
ATTCATAAAGCATTCTTGACCCTGCTTAATACATCCCAGGAAAATCCGTT
GAGTGTCCATTAAAATTAATGCATGAAATGATGAAAGCAATCTGTTCATT
TCCTACCAATGCTTTAAAATAAGTGTTTCCTGACTTTTCAATTCTATTTT
TAAAAATTCCTTACCTATCAAATAAAAAAAACTTTCTGTTCCCTGAAAAA
ATGTCTTACCTTTTAAAAAAATTGAATGTTTCTTCCAATGGTCCCAACTT
TATTCCCACCCAACCCTGTGGTCTTCCACCCCCTCCGTCAGGAACTCCGA
TGCCTTCTTCTTGGGGGTTTCGTAACCATTCCCCGTGCTCCTTCCTTAAA
TATATAAACTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_m07.b1 MSMg01no123_m07.b1 CHROMAT_FILE:
MSMg01no123_m07.b1 PHD_FILE: MSMg01no123_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:56 2005
         (336 letters)



>mm_chr2_146266498_146267233
          Length = 736

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaaactcctattctctcctacttgcttttgatcatggtgcttatggcaattgaaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gttaaactcctattctctcctacttgcttttgatcatggtgcttatggcaattgaaaccc 546

                                                                       
Query: 61  tgactaagaggatacagaaagtcaagtttcattgctgcctggagaaaccacacatttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgactaagaggatacagaaagtcaagtttcattgctgcctggagaaaccacacatttgag 486

                                                                       
Query: 121 agagaaggtgatgggaaaggaagcactttattggcaacgaggtgacaagttggaagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agagaaggtgatgggaaaggaagcactttattggcaacgaggtgacaagttggaagatga 426

                                                                       
Query: 181 ggactcttgtgtgtcttagaaaaagaagaagccatgttgaggggttgcaggtataagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggactcttgtgtgtcttagaaaaagaagaagccatgttgaggggttgcaggtataagact 366

                                                                       
Query: 241 ccatagatactgattttgggtatgggcatagtgggtaggctttttattttggcaggaatg 300
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 365 ccatagatactgattttgggtatgggcatagtgggtaggcttttgaatttggcaggaatg 306

                                               
Query: 301 atactatttctgaattttggttagtttgcttttctg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 305 atactatttctgaattttggttagtttgcttttctg 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no123_m07.g1 MSMg01no123_m07.g1 CHROMAT_FILE:
MSMg01no123_m07.g1 PHD_FILE: MSMg01no123_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:57 2005
         (598 letters)



>mm_chr2_146141729_146142726
          Length = 998

 Score = 1125 bits (582), Expect = 0.0
 Identities = 594/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagaatacgtctaacctacatttgcgtgtatatggtatgcttgtggatgtaggcacata 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagaatacgtctaacctacatttgtgtgtatatggtatgcttgtggatgtaggcacata 260

                                                                       
Query: 61  tgtatatgtatgtatatatatgcaggtagaggagaccagagaacaacactggttgtcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatatgtatgtatatatatgcaggtagaggagaccagagaacaacactggttgtcttg 320

                                                                       
Query: 121 ctctatgcatgacaaatatacttaaaagtacccaatagtggtaacataaattcatgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctatgcatgacaaatatacttaaaagtacccaatagtggtaacataaattcatgaaga 380

                                                                       
Query: 181 cctgaataaattcaaagtacaatcttcatgggctggaagtttttatacttgttaagatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgaataaattcaaagtacaatcttcatgggctggaagtttttatacttgttaagatgt 440

                                                                       
Query: 241 caattcttctgaaatcaaaatttagattctaacacaaactcttttttcatacagaaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 441 caattcttctgaaatcaaaatttagattctaacacaaactctaaattcatacagaaatgg 500

                                                                       
Query: 301 aaagacagaaattagctatgacaattatgagatgatttatactgagtttgaggaataaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagacagaaattagctatgacaattatgagatgatttatactgagtttgaggaataaat 560

                                                                       
Query: 361 ataaaattacagtaattaagatattaaaacattaatatcaggatagataaattgacagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaattacagtaattaagatattaaaacattaatatcaggatagataaattgacagat 620

                                                                       
Query: 421 gaaaatatacagcccaagaatagaagcacatattatggcaactgttccacagtaaggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaatatacagcccaagaatagaagcacatattatggcaactgttccacagtaaggcag 680

                                                                       
Query: 481 gacatttctggggaaaggaagtttgttccgataaagactctggaacaaagggagaggggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacatttctggggaaaggaagtttgttccgataaagactctggaacaaagggagaggggt 740

                                                                     
Query: 541 aagaaaaaatgaaacctgatctctatttcatcacacacaaaaatctgagctggattgt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagaaaaaatgaaacctgatctctatttcatcacacacaaaaatctgagctggattgt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)