BAC Information

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BAC

Clone NameMSMg01-123M23
Chromosome2 (Build37)
Map Location 119,552,578 - 119,552,904
singlet/doubletsinglet
Overlap geneRtf1
Upstream genePlcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622
Downstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123M23.T7 (MSMg01no123_m23.b1)MSMg01-123M23.TJ (MSMg01no123_m23.g1)
ACCAG333322AG333323
length1,2481,240
length of high quality
(start - end)
327 (132 - 458)278 (124 - 401)
definitionCHROMAT_FILE: MSMg01no123_m23.b1 PHD_FILE: MSMg01no123_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:02 2005CHROMAT_FILE: MSMg01no123_m23.g1 PHD_FILE: MSMg01no123_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTTTNNNNTCTCACTTCGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCACTGAAAGTGAATTCCTCATTTTGGACAGAAGCGGTAAGCGA
CCAGACTGCAGAGCACTCTTTTAAGGAACCATTTTCTTTCCTAAACCTCT
TACTGATAGCTTCTTTTTATATTTTGATCCAGATGTTTTCTGCTGGCATG
CAGTTGCCCACACTAGATGAAATCAATAAAAAGGAATTATCTATTAAGGA
AGCTCTCAATTATAAATTCAATGATCAGGACATTGAGGAGGTAAGAAGCC
TGAATCTCAGAGGCTGGCTGTTCTTTAAGATCCAGTTTGGAAAAGGTCAG
ATTTGTCATTTTCTGCAGTCTGAGAAATTAAATTATTGTTCTCTTGTTAT
TGATACTTTATTCTGCTTTCCCTATATAGTATCATCTACAGTGAAACTAC
ATAGATTCTTTTTTTTATCCCCACCCCGTATTCCCCTAGGCTTGGTCCTT
CAAAAAGTTTCTTTCTCCAAAACGTTTTGATAGACTTCTTAGACCTCTGT
TGTCTTGGACTGTGGCCAGCCTCACAGTTCTGTGCCTTTGTGCTGCTGCT
GCTGCTGCTGCTGCTTGGGGCGCATGCTCCTTCAGACTGCCCCAGCATCT
CCATGGCCCAGGAAAGCAGCATGGTGTCCCTTGGAATTTGCTCACCCTCT
GTGGTGTGACACTGCTACAGGACAAGCAGTCCCCTTTAACTGGTAGCTTA
CCTCCAAAATGGTCTCATTTATCCTGTCTACCATCGTATTTCCCAAATAC
CTCATTGCTGATGTCTCTTCCCCGGTGTCAAATGTTAAACATAATGAAAG
GTTCAAAAAAGCCCCACCCAATCTTTGCTTATGAAAAAACACTTCCCCTG
CTTTAACTGAAAAGGTCATTATTTTCCTCTTTTCCAGGTACTGGTTGATA
TTGTCTCCACTCTTTTAAAATTTATCTAACCTTTTCTTTCTTAATGTTTA
TGAATTTTCTATATTCCATCCTACCCTTTATGGTGGGTCTTTTCAATCTC
CTCGTTATACATTTTTTCTAATACCCTCTCTTTTTTGGTGTTGCCTTTGT
AAACAACCCCTCTTAGGTGGGAACTTGTTCCCTTTTCTTATTAATCTAAG
TTATTCTCTTTTCTTACATTCACTATCCCNATTTCTCGCTCATCTCCTTC
TTCTCTTAACAACTAAAATATTTTTCATCTTCTTACTTCTCTCTCTTA
ACCCCCAACTGATGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTAAAAGCCCTGCCTTCCTCTGCCTCCTG
AATGCTGGGATTTAAAAAATCCGCCACCATTCTCAACTCTGGGATCCAAA
TTTAAACAACTCCCCACTCAACAGCTATTCCTGGCTTTCTAGTAGAACTC
AAGCTCAAAATCTACAACTAAATCTCAGTACTCAAGAGGGAAAGGTAGGA
GAATCATTCCAGGTTTAAGACCAGCTTTGGTCTAACAGCCTTGGTCTATA
CAGAGAAGCCAGCTAAGAATACATAGCAAGACATTATCGTTTTTTAAAAA
CTATAGTAATAAGACTGAGTGTGGCAGTACCTTTCCGCCCTTCAACCATT
TCTTATTTGCAGGGAGAATGAGTGACACAGAGAGACAAAGAGGGAGAAAG
ATATTTTTTTAGGCCGACTTTTAATTTGGCGACCTTATACCTAAAAAAGA
TCCCCACTTGTACTCAGCTCCAGCCTGGAAGAATGCCCCANAGGNCACGA
ATACAATACCGTGCCTTCTGGATTCATTCAGACATGAATAACAGGGCTAT
CTGTTTGAAGTCCAATGATAATATGCAAGGGTCACCCAGGTGGTACTGGT
TTTGAAGGCATGAAGGGGTCACACAAAACAGCTGAGGCTCGTCATTGTGA
GAGGCCATGTAAGGCTATTGTTGAAGGTGCCGCTTCCCTTGCAATTGAAG
GTCCAGGACTGAAGGGGTCATGCATCGTTTTTGTAGATCCCCGTACCATG
AGATGACCCCCCAAAGCACCTTCACCATTGTAGTACATGCTATCTGCATC
CTATAATTATGTACCTTGTTGTTACAAATGACATTGCCTGGTAAAAATGA
CCCCATTCCCTTGCACGTACCCTACAAAAATTCTCGAATTGTAACCCCCC
ATCTTTGATCCTCTTTTACAATTGACCTTTCTGCTTTTTGAATTGTGACT
GGTGACCCTGGAAAATTTTCCCCCCCTTTGATTCCAACAACTTCGTCTTT
ACCTGTATACCCCATACCCTTTATAAAACCTTTTTACTTCTTCAAAAAAC
ACCTCTTTTCATTTTTCCTACAACTATGCCATCTATTTCTAATTCAATAC
TCTTATCACTTTTTACACATCTCAGTCTACCGTCACTCGTCGGTCACAAT
TCTTTCCAAGTCTACTTCTAACAACCTCTCCTGGTACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_m23.b1 MSMg01no123_m23.b1 CHROMAT_FILE:
MSMg01no123_m23.b1 PHD_FILE: MSMg01no123_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:02 2005
         (327 letters)



>mm_chr2_119552378_119553104
          Length = 727

 Score =  611 bits (316), Expect = e-179
 Identities = 325/328 (99%), Gaps = 2/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctttcctaaacctcttactgatagcttctttttatattttgatccagatgttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctttcctaaacctcttactgatagcttctttttatattttgatccagatgttttct 260

                                                                       
Query: 61  gctggcatgcagttgcccacactagatgaaatcaataaaaaggaattatctattaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggcatgcagttgcccacactagatgaaatcaataaaaaggaattatctattaaggaa 320

                                                                       
Query: 121 gctctcaattataaattcaatgatcaggacattgaggaggtaagaagcctgaatctcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctcaattataaattcaatgatcaggacattgaggaggtaagaagcctgaatctcaga 380

                                                                       
Query: 181 ggctggctgttctttaagatccagtttggaaaaggtcagatttgtcattttctgcagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctggctgttctttaagatccagtttggaaaaggtcagatttgtcattttctgcagtct 440

                                                                       
Query: 241 gagaaattaaattattgttctcttgttattgatactttattct-gctttccctatatagt 299
           |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||
Sbjct: 441 gagaaattaaattattgttctcttgttattgatactttat-caagctttccctatatagt 499

                                       
Query: 300 atcatctacagtgaaactacatagattc 327
           ||||||||||||||||||||||||||||
Sbjct: 500 atcatctacagtgaaactacatagattc 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)