Query= MSMg01no123_p05.b1 MSMg01no123_p05.b1 CHROMAT_FILE:
MSMg01no123_p05.b1 PHD_FILE: MSMg01no123_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:21 2005
(279 letters)
>mm_chr2_53033139_53033817
Length = 679
Score = 524 bits (271), Expect = e-153
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 1 gcatatccacccctcatcctgtgttgagacttcatggtggtgctaagaaaagaagtcttt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 479 gcatatccacccctcatcctgtgttgagacttcatggtggtgctgagaaaagaagtcttt 420
Query: 61 ctttcccaagaagaataacaggagaaaggctgagtttgctgtgctgaaaggtagataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctttcccaagaagaataacaggagaaaggctgagtttgctgtgctgaaaggtagataaaa 360
Query: 121 aatgcaaaattagttgcctttgttgagagtctccttccggtgatgaaagtggtactggag 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 359 aatgcaaaattagttgcctttgtcgagagtctccttccggtgatgaaagtggtactggag 300
Query: 181 atttcatgctcagtcacttgacagacagcactgtggcgaatggtatctgacttagtgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 atttcatgctcagtcacttgacagacagcactgtggcgaatggtatctgacttagtgctt 240
Query: 241 caacaaaccaaagacaaggaggtgtgcatgagttaataa 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 caacaaaccaaagacaaggaggtgtgcatgagttaataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_p05.g1 MSMg01no123_p05.g1 CHROMAT_FILE:
MSMg01no123_p05.g1 PHD_FILE: MSMg01no123_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:22 2005
(333 letters)
>mm_chr2_52862994_52863727
Length = 734
Score = 592 bits (306), Expect = e-173
Identities = 327/334 (97%), Gaps = 1/334 (0%)
Strand = Plus / Plus
Query: 1 gaaaaaccactgaaacacagtgtgtagccaactgaaagtctctgttgcagctggctggag 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaaccactgaaatacagtgtgtagccaactgaaagtctctgttgcagctggctggag 260
Query: 61 gtggagcatagagcgattagagtaagggg-ctttacaggcaaaccccacatcctggcatc 119
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 261 gtggagcatagagcgattagagtgagggggctttacaggcaaaccccacatcctgggatc 320
Query: 120 ttgctctgcagtggcaggaggatgtttgtacaaggaaacagtttgacagaggccaagata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctctgcagtggcaggaggatgtttgtacaaggaaacagtttgacagaggccaagata 380
Query: 180 agttagctggggcaccttgactttgggttcctagaatagagttgggtaattttccatggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttagctggggcaccttgactttgggttcctagaatagagttgggtaattttccatggg 440
Query: 240 gcttcccatcaaggagatcaaatgctagtcaaacatcaatgttctcttcaagaatacaag 299
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 441 gcttcccatcaaggagatcaaatgctagtcaaacatcaatggcctcgtcaagaatacaag 500
Query: 300 gtggtggactttgtcttgtcacaacacttcataa 333
||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggtggactttgtcttgtcacaacacttcataa 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space: 234900
Effective search space used: 234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
