BAC Information

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BAC

Clone NameMSMg01-124B12
Chromosome2 (Build37)
Map Location 25,554,480 - 25,554,802
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10
Downstream geneLcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124B12.T7 (MSMg01no124_b12.b1)MSMg01-124B12.TJ (MSMg01no124_b12.g1)
ACCAG333535AG333536
length1,2841,219
length of high quality
(start - end)		105 (112 - 216)324 (117 - 440)
definitionCHROMAT_FILE: MSMg01no124_b12.b1 PHD_FILE: MSMg01no124_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:43 2005CHROMAT_FILE: MSMg01no124_b12.g1 PHD_FILE: MSMg01no124_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCGGACA
ACAGGGCTACCTTAAGACTGACTCACACCGAGTGTGGTGATGCACGCCTC
CTTTAAAAGCACTCGGGAGGNAGAGGCAGGCGGATTTCTGAGTTCGAGGC
CAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGAGCTATACAGAGAA
ACCCTGTCTCGAATAACAAAACATAAAACAAAAACAAAAAAAAAAAAGAC
TGACTCAAAAGAAATAGAAAACCAATAACAATAGAGAAATCCCTGGTGGG
TATGATATACACCACAGACTCCCACTGAGCTTAATAAGCTGCAGCTTCCT
GCAAACAATGAAAAGTTTGCAGCCAAAGCAACACAATGGTGTTTTTTTGG
CCAGCCTGGCGCTAGCTTCTTATGTAAGGTACTCCAGTCCTACTGTTTTT
CTGCCCCCCCGCAGTAGGACGTGCCTCCAAAAAAAAGGGGGATGGTACTG
GCCTACCTGCACTATTTGGCTTTCAAATAGGGTACTCTTTCATCAAAGAA
TGATTCAATATATACCTACATCTTTTTTCGCTAGGCAGGCTCTAGCTTCC
CTTATCTCTGTATTCTCTAGCCTCATCTTCCCAAGTGCTGGGTTCCCATT
GCTTACTCCTACAACAAAAGGTTCTCTCTTTTCCTTTCCTTTTCGTCCTT
TTCGATACCGTGTTTCTCCTATCATCTTGTTGTCTTTCTTTGTCATCTTC
CTCTGTTCTCCTCTTCTCTTTTCCCCAGTTTCTTATTATCTTACCTGGCC
TTCTCTCTTTTTACTTTATTGTACATTTTCGTTATTGTGTCCCTCATGCT
TTCTCTTTCAATTTCTAACCCTTTTTTTCTTTCTCTTTTTCATTCTTTTT
CTCTTTCTCTCTCTCTCTAACTTTACTTTCTTTTCATATTCGTTTTTGCA
CTAGTTTTTATTTACCTTGTCTTCTCTTATCTTTTCCTATTTTTCTCCTC
TATTTTTCCTGTTCTTTCTCACTCCACTCTCTTCCTTTTCTCTATCCCCT
TTAATTTCTTCTCTCTTGTATCCTCTTTCTGCTTTTCTCTCTTCCTCTTC
TCCGTGTCCTTTTTTTCTCCTCTTTCTCTACGTTCTTCTGACTCTTCTCT
TCCCGTCTTCTCTTTCTCTTCTACTCCACTCCTTTTTCTCTCTTATATCC
TTTCCACTACCTTTTCTCTCTTCTCCCATCTACGTTCCTTTCCCTCTCTC
ACTTCTCCTTCTCACTCATTTTCTCTAGACTATA

TCCCCTCCCATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACTTTTAACCGCACATTAGGGTCATGAGTATGTGT
CCTCTACCTTAATCAGTGAAAGGGTTCACGCCTGTTACTCCAGGGGGTTC
ATGCCCAACAAGGGGACTTGACCTTTTGTTGCTCCCTCCTCTGAGGGCCC
ACTGACAGGACCTTTGCAAAGCTGGGACTGCCTTGATACATCTGAGGTCC
ATATATGTGTTCGTTTCTTGCCATCTTGTGCCCTGACATGGGATGGAGAG
CCAGGCTCCATCACAGCCTGTCCTGAACCACCCCTGTGCTCCTGTTGAAC
CTCTCACCTCTGGAGTCCACAGCCTTCCTTCTCATTAGCTTTGATCTTCC
TCAGGCTCTCAACACAGCCAGGTCTCATTCCCTACAGACAAATGGATGTT
TGAGGCCCCATGAGTCCACGTGCTGACCTGTGTTCTGAGTTCAGTGAAGC
CTGCCCTGACTTCTGGCCTTAGCTCACCTTCCCTCCCACTGGGAACTCTG
CCTTCCACTTCAAACTCTGCAGTTCCTGGACTTAGCCACCTGCCCTGAGT
CACAGAAGTCATCTCTGGACAAGGGTTTCAGTTCCTATGGGACTGTCCAC
ACTCCATGGCCCTGGGGACAGGTGCTAGTCCCACAATGGCATCTTTGTGC
CTCTCTGGACCAAAGGTGGACAGGCTCAAATATCCATACACAATATCAGT
GAGGTCTCTTGTCACATGCCCTGGATTGTGCTGAGGAGTTGGCATGGCTC
GGGTTTTGACGTTAGTATAGAAGGCGTTGATCTTGAACCCTGTGATAGGG
CGCCGCCGATGCCCCTTTATGAAAAATCCAGAAACCGGTTTTCACATCTC
TGTGTCCCGGGTGAAGTCTCTGTACCTGTCAGGTTTTCCTCCATACCTTG
CCCGAATTTTTCCTGCTAACCATGCCCCCCACTTGGTACCAGTCTCAATC
CTTTGAACGGAAAAAAACCATTGTGATTATTATAATCCTGGCTCCCCCAT
CCATTTCCCTTGCCTGAATTGTCCTTTGCTCTGGAAATCTTAAAGTCCAA
ACCTCTCCGAATCCTCTAAACTCTGGTGGTTGTTCATAAACTTTTTCTTA
TGCTTCTTGACTTACCTCTTCTGTTTTCCCTCATCCCGGGCTCTGTATTC
CCCTCACTCCAGTATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_b12.g1 MSMg01no124_b12.g1 CHROMAT_FILE:
MSMg01no124_b12.g1 PHD_FILE: MSMg01no124_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:43 2005
         (324 letters)



>mm_chr2_25554279_25555002
          Length = 724

 Score =  563 bits (291), Expect = e-165
 Identities = 315/323 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaaagggttcacgcctgttactccagggggttcatgcccaacaaggggacttgacctttt 61
           ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 524 gaaagggttcacgtctgtgactcctgggggttcatgcccaacaaggggacttgacctttt 465

                                                                       
Query: 62  gttgctccctcctctgagggcccactgacaggacctttgcaaagctgggactgccttgat 121
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 464 gttgctccctcctctgagggcccactgacaggacgtttgcaaagctgggactgccttgat 405

                                                                       
Query: 122 acatctgaggtccatatatgtgttcgtttcttgccatcttgtgccctgacatgggatgga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acatctgaggtccatatatgtgttcgtttcttgccatcttgtgccctgacatgggatgga 345

                                                                       
Query: 182 gagccaggctccatcacagcctgtcctgaaccacccctgtgctcctgttgaacctctcac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gagccaggctccatcacagcctgtcctgaaccacccctgtgctcctgttgaacctctcac 285

                                                                       
Query: 242 ctctggagtccacagccttccttctcattagctttgatcttcctcaggctctcaacacag 301
           ||||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||
Sbjct: 284 ctctggagtccacagccttccttctcattagctttgagcacccacaggctctcaacacag 225

                                  
Query: 302 ccaggtctcattccctacagaca 324
           |||||||||||||||||||||||
Sbjct: 224 ccaggtctcattccctacagaca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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