BAC Information

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BAC

Clone NameMSMg01-124B22
Chromosome2 (Build37)
Map Location 56,463,198 - 56,463,926
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124B22.T7 (MSMg01no124_b22.b1)MSMg01-124B22.TJ (MSMg01no124_b22.g1)
ACCAG333555AG333556
length1,1911,192
length of high quality
(start - end)
730 (90 - 819)---
definitionCHROMAT_FILE: MSMg01no124_b22.b1 PHD_FILE: MSMg01no124_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:47 2005CHROMAT_FILE: MSMg01no124_b22.g1 PHD_FILE: MSMg01no124_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGGATTCTGNNNNGGGCACTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCCTGGAGATCATTGGCCCGTCAGCCTAGCCTAATCAATA
GACACTCAATCTTAATAACCCTTAGGAAAGAGGAATTGATGAAGACACCC
AATATTGACTTCTTACGTGTGTATAAACAAATAGACACAGGTACGTGTTT
GCAATCACACAGCCAAGAACCAATGGAAGAGCCAATGTAAGAGGGAGAGA
GAACCATGAGAGAGAATCCTTGGGGTTGGTTGTTTGGCTTCATTTATATA
ATTTTTTAAACTTGTATTGGTTCTTTGTGAATTTTACACCACCCAATTTC
ATTCATCTCACCTTCCCTTCATACCCACCCTCAACCCTTCCAATCTCCCA
CCCAACCGAGAAAATAAAAACTCTTCTTGTGGAAGCTGTAGTGTGTCATA
GTGTGTCCTACAGTATACTGCTTTGTCCACATTTCTTTGATTACAAATGT
TCATTGCAATGACTTGTTGGTCTAGTATAAGGCATCTGGCTTCTGCTACT
CTATAAATCCTGGAACGTCACTGGGACTCCTCTCAGATATCCTGTTGCTG
TCCTGTATCAAGGAGACCCTATAGTTTTGGATCTGTAAGACCTGCCATTT
TATGCACTCCCGCTGTTCATCCTTGGTGTAAATATTGGTGTGGGCCAATT
GAAAGCCCTGGTTCTGGCCCTGAGAGATATCTCAGCTGGTCACCTACATA
CTCTCCCAATCTCACACCCTCCAGGCCCGCTCATCAGCATCTCCCGGCAA
TCAGAGCCAACTTTATCCTGCGGCTCATGTGAGTGCAGAGTCTGCTCACC
TAAGTAGGGCAGCTGGTGAGGGACATGGCCAATTCTCCCTCTCTCATGAA
CCCCACTCTTCACGACCCCGTGCCAGCTTCTCCTGCCTGCTGGAAAGGCA
AGAAGTGATCTGGAGAGAACATTTTGCCCTATGTCATCCTAAGGAAAACA
AATGACCGAACGGAGTTCTTCCCTTGCCTCACTCCCCCTGAAGCCTGGCA
AGCTCTTCCTATTTCTCATGAACCCTAGGGGCCATGGATCCCGGCCCTTT
CACAAGGGGCCAAGGCCTTGTGGGGAGGGATATCTTTTTCCCCTTTTTCA
TGAAAACTTGCGGGAACCAACTTGTTCTCCATTCTTTCTCT
CGATTATNTNNATTTGCATGGANCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTTAAATGAGGTTCCTTGAATTTCTGGAGTTCAGCTTCCTGAGCTCTTT
GTATATATTGGATATTAGTCTTAACCCAAAGTAAGTGACTATCATACTAG
GTTTGATAATTACAGACATTACAAACCCTTTAAATTTTTAAAATATGAAA
CATTTTTTTAAAATAAACCGAGGGGGGGTTGCTTTTACCCGGGCCAATTT
GGCTTACAAAATTTAAAAAAAAATTCCTTTTTTGGGCCCCGGGAAAATTA
AAACTCNNNNNATACCCCNNNNAATAACCCACCCCCCCATTTTTTTTCAC
TCATCCATTCTTCATTTTTTTCTTTGTATTCACCCTTTTTTTTTCCTCCC
CCCCNNTTNTTCTCCTCCCTCAAAAAAAAGGGGGTTTCTTTCCCCCCCCC
GGCACCGGGGGGTATATTTTTTTTCATAACAAACCCCCTTTTCTCTAAAA
AATAATTTTTTTTTTTTTATTATCAACGCTTCCCACCCNCANCAAAATTT
TTTTTTCTTTCTCTATTACTACAAAATAATTTATATTCCACTACCCCCNC
CCCCCCCCCCCTTCCTCCTCTTCCTTTTCCTAACCTTCCTCTCCCTCTCC
CCACTATCCCCCCTCTTCTTTTTCTATCCCCCTCCTCCTTTCCTCCTCTT
CTACCCTTTCTTCCTACTCTTACTATTCTTTTTCTCCTTCTTCTCTCTTC
TTTTTTTTTCTTCTTTCTCCTATATTCTTACTTCTNTCCTCTCTCCTTTC
CTCCTTTCCTTTCTCTACCCTCNTCCCTCCCCTTCTTTCTTCCCTCTCTT
TCCTTCTCCCTTCTCTCTCCCTCCCTCTNTNTCCCTACCTCTTTCTCTTT
CCCTCCTCCCTCCTTCCTCTTCTTTCCTTTCTCTCTCCTNNTTNCCNNNN
CTTTTCCNTCTCTTTTCTTTTCTCCTCTCCTCTNCCTCTTCTNCTCTTCC
CNNNNNNNNTTCTCCCNNNNNNNNNNNNNNNNNANNNAATAATTCCCAAA
ACTCTATANNCCCNNNNNCCTCCNCATCCCCCCCCATATTTCTTTTTTTT
CATCATCCCNNNNNNNNNNNNNNCTNTNNNNTTNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_b22.b1 MSMg01no124_b22.b1 CHROMAT_FILE:
MSMg01no124_b22.b1 PHD_FILE: MSMg01no124_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:47 2005
         (730 letters)



>mm_chr2_56462998_56464126
          Length = 1129

 Score = 1323 bits (684), Expect = 0.0
 Identities = 718/734 (97%), Gaps = 9/734 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaatcaatagacactcaatcttaat----aacccttaggaaagaggaattgatgaaga 56
           |||||||||||||||||||||||||||    ||     ||||||||||| ||||||||||
Sbjct: 201 cctaatcaatagacactcaatcttaataagaaa-----aggaaagaggagttgatgaaga 255

                                                                       
Query: 57  cacccaatattgacttcttacgtgtgtataaacaaatagacacaggtacgtgtttgcaat 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cacccaatattgacttcttacgtgtgtataaacaaatagacacaggtacgtgtttgcaat 315

                                                                       
Query: 117 cacacagccaagaaccaatggaagagccaatgtaagagggagagagaaccatgagagaga 176
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 316 cacacagccaagaaccaatggacgagccaatgtaagagggagagagaaccatgagagaga 375

                                                                       
Query: 177 atccttggggttggttgtttggcttcatttatataattttttaaacttgtattggttctt 236
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atccttggggttggttgtttgtcttcatttatataattttttaaacttgtattggttctt 435

                                                                       
Query: 237 tgtgaattttacaccacccaatttcattcatctcaccttcccttcatacccaccctcaac 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgtgaattttacaccacccaatttcattcatctcaccttcccttcatacccaccctcaac 495

                                                                       
Query: 297 ccttccaatctcccacccaaccgagaaaataaaaactcttcttgtggaagctgtagtgtg 356
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 496 ccttccaatctcccacccaaccgagaaaataaaaactcttgttgtggaagctgtagtgtg 555

                                                                       
Query: 357 tcatagtgtgtcctacagtatactgctttgtccacatttctttgattacaaatgttcatt 416
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 556 tcatagtgtgtcctacagtatactgttttgtccacatttctttgattgcaaatgttcatt 615

                                                                       
Query: 417 gcaatgacttgttggtctagtataaggcatctggcttctgctactctataaatcctggaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcaatgacttgttggtctagtataaggcatctggcttctgctactctataaatcctggaa 675

                                                                       
Query: 477 cgtcactgggactcctctcagatatcctgttgctgtcctgtatcaaggagaccctatagt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cgtcactgggactcctctcagatatcctgttgctgtcctgtatcaaggagaccctatagt 735

                                                                       
Query: 537 tttggatctgtaagacctgccattttatgcactcccgctgttcatccttggtgtaaatat 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tttggatctgtaagacctgccattttatgcactcccgctgttcatccttggtgtaaatat 795

                                                                       
Query: 597 tggtgtgggccaattgaaagccctggttctggccctgagagatatctcagctggtcacct 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tggtgtgggccaattgaaagccctggttctggccctgagagatatctcagctggtcacct 855

                                                                       
Query: 657 acatactctcccaatctcacaccctccaggcccgctcatcagcatctcccggcaatcaga 716
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 acatactctcctaatctcacaccctccaggcccgctcatcagcatctcccggcaatcaga 915

                         
Query: 717 gccaactttatcct 730
           ||||||||||||||
Sbjct: 916 gccaactttatcct 929


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1129
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1119
Effective search space:   805680
Effective search space used:   805680
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)