BAC Information

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BAC

Clone NameMSMg01-124C19
Chromosome2 (Build37)
Map Location 155,548,328 - 155,713,226
singlet/doubletdoublet
Overlap geneEdem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Upstream geneLOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap
Downstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124C19.T7 (MSMg01no124_c19.b1)MSMg01-124C19.TJ (MSMg01no124_c19.g1)
ACCAG333595AG333596
length1,2531,161
length of high quality
(start - end)		280 (118 - 397)272 (55 - 326)
definitionCHROMAT_FILE: MSMg01no124_c19.b1 PHD_FILE: MSMg01no124_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:55 2005CHROMAT_FILE: MSMg01no124_c19.g1 PHD_FILE: MSMg01no124_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,548,328 - 155,548,604)(155,712,955 - 155,713,226)
sequence
ATTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGG
TATTCCCCAAAACCTTAAAGGCCCCAGAACCCTGACCACGTGGCTCCTCT
GGCCCCTTAAACAGTTCAGGTGCTGGTGTGACCCACACTTTTCAGTCAGA
ACCTCTCTGTCCTGGGTTCGGGTACACTGAGCCAGCAACCTCGCAGAAAC
CCAGCCCGCGTGGTTTCCTGGCGCCCATTTAAAGGGATCCCACATAAACA
AAGCGGGGATCGGAAGTGGACAGCAATTGTTTCTACCTCTCTGTCCTCCC
CACTTTGTGGAAAACAGCACCAGCTGCTTCCCAGTCCTCTTTATCCCAAA
GCCTCTGCCACAGAGGCCAAGAACCCTGGCACTACCGTTCCCCGTCTTCT
TCGCGGTGTCGCCCTAACCGGGGTCCTTGTGAAGTACACCTTTGGGAACA
AATCTTTTCCTGATGGCAGATATGTCTAGCATGGTTTCTATTCTGCCCCT
GCTTTTCTGCCTTGCAAGCAGACTCAGTTTCTGGTGTGGTGGCAGCTGTG
TTTCACCACGGGTTAAAACATGAGATTAAAAGCCAACTACGGGTGACTAG
GAAGGTACAAAGAGCCTGTCTCTGATGGCATCGTCGAGTAGCTGACTCAT
TGCTAATAGAATAAAGAAATTACCTTTTGGCTTTTCTTTTCCTTTTTGAA
AATGTATTTTGCGTGTGTGAGTGTTTTGCCTCCATAGTCAAGAGTGCCTC
GTTGGTCCTCGCTGTCCTTGCAGCATATATTTGTGTGTTTTGAAGTTCTC
TGTTTTCTTCTTTATACTTCTTCCTTTTCTTTCCTTCTCTACCTTACCAT
TTTTTTTTCTTCCTTCCTTAACCTCCCTTTTCTTTTCTCATATTCTCTCT
TTCTTTAATTTTTTTCCCTCTCTCTTCTTTCTTATCCTTCTTCTTTTTTT
CCTCCTATTTCTTATTTTTTCTTTTTCTTCTTCTTTTCCTTTATTTTTTC
ATTCTCACTCTCTCGTTTTTTTCTCTTTTTCTACTCCTTTCTTCTTTTAC
TTCACTCTCAACTTTTCTTCTCTCATATCTCCTTACCTTTTTCGCATCTA
CCTTTCTTTTCCTCCTCTTCCTTCTTTCCTTCCTAACTTCCCCTTCNTTT
CTCTCTTCCTCCTCCCTCTTTTCTTTCGCTCTCTCTTTATCCCCTTTCTA
CTAATTCTAACTATCTCTATACTTTCTTTCCTCATTCCTCTGCTCTCCTT
CTT

CCCTAAAGGGCCCGNCCTCTAANAGCCACGTGGGAGGCCTCCCTTTACAG
ACGTAAGCATCTGAGGTAGCCTCATCTGTGCAGTGCTTACACTATCATAT
GCACTGTGCAAGCCTTTTCCAAACTGCACACTTGAGATGGACTTTTTTTT
ACAGTGCCTGTGTCATAGGTGTCTTAAAGCTGTACCTTTAATATAGTGTG
GATATTAACGACAATAAGGTCACTCCTGCATTTCTGATTCGTTGTGCTGT
GCTAAAATCCCTCCTGTGTGAACTGTGTGAATTCATGGAACATGTGGTTA
CCCAGCGACTGTTTTGCTTCCACTCACGATGTGTTTAGTCCGAATGAAGC
AGGAAGGCCGGACTGGGAAGTACATGTGCCGGATCATAGTTCATTTCATG
TGGCAAGATGTGTAGCAGCGCGACCGCGTCATGTTGTTGAGTGCTTCCCC
AGGTGCTGCCACGGCAGAATGTCTGAGCCATGCCTGCGGTTCTTTCCACT
TTAGGATAGATTTGCCTTTGGAATTCTGTGAAATGTTTCCCTAATGTCTT
AGAGGCGTCTCATCTATAGTCACCTTTTTTTGTCTCTTGCAAGCTTGACA
TACATCGTATACTTTATGTCTTTGTGCACATTTATGTTGCTTGCCCCTAT
GAACACTTCTTGTATACTTAAGTCCATTTTATTTCTTTTGTAGCCTTACT
ACGCACTGTCTTTCCCCATTATATATCCTATCTCATTCAACTCGCCTTCT
GAACTTTGCTTTCATTTTTTTTATTTACTTCCCCCTTTTACTTAACTTTT
TTGATTGACCCTGTTTTTCCTTTCTTGATTTTTTTTATATACTTTTTTTT
TGTTCCTCTTAGAAATTCCCTGTATTCCTCTGCCTTCCTTTTATATGTCC
TCTCTTATATGCTCTCTTACCCTCATATCTTGATCCTCTCTGTTTTTCCC
TTACTTCTTTTTATCTCGTCTATCTAATTTTCTGCACTTCTTTCAGTTTC
CTATTGTATTTTCTCTCCCTTTATCCTCCTTAATATTATTTTCCCCCTCC
TTTTTCATTTATATTCCTATCATTCTCCTATCACATTCCTCTTCCTTCTC
TCCTCATAATTTCACCTCTTCTGTTTTCTGCTCCATTTTCTACCATATCT
TTTCTTCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_c19.b1 MSMg01no124_c19.b1 CHROMAT_FILE:
MSMg01no124_c19.b1 PHD_FILE: MSMg01no124_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:55 2005
         (280 letters)



>mm_chr2_155548128_155548807
          Length = 680

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgctggtgtgacccacacttttcagtcagaacctctctgtcctgggttcgggtacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgctggtgtgacccacacttttcagtcagaacctctctgtcctgggttcgggtacac 260

                                                                       
Query: 61  tgagccagcaacctcgcagaaacccagcccgcgtggtttcctggcgcccatttaaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagccagcaacctcgcagaaacccagcccgcgtggtttcctggcgcccatttaaaggga 320

                                                                       
Query: 121 tcccacataaacaaagcggggatcggaagtggacagcaattgtttctacctctctgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccacataaacaaagcggggatcggaagtggacagcaattgtttctacctctctgtcct 380

                                                                       
Query: 181 ccccactttgtggaaaacagcaccagctgcttcccagtcctctttatcccaaagcctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccactttgtggaaaacagcaccagctgcttcccagtcctctttatcccaaagcctctg 440

                                                
Query: 241 ccacagaggccaagaaccctggcactaccgttccccg 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacagaggccaagaaccctggcactaccgttccccg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no124_c19.g1 MSMg01no124_c19.g1 CHROMAT_FILE:
MSMg01no124_c19.g1 PHD_FILE: MSMg01no124_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:55 2005
         (272 letters)



>mm_chr2_155712755_155713426
          Length = 672

 Score =  518 bits (268), Expect = e-151
 Identities = 271/272 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcatctgaggtagcctcatctgtgcagtgcttacactatcatatgcactgtgcaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aagcatctgaggtagcctcatctgtgcagtgcttacactatcatatgcactgtgcaagcc 413

                                                                       
Query: 61  ttttccaaactgcacacttgagatggacttttttttacagtgcctgtgtcataggtgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttttccaaactgcacacttgagatggacttttttttacagtgcctgtgtcataggtgtct 353

                                                                       
Query: 121 taaagctgtacctttaatatagtgtggatattaacgacaataaggtcactcctgcatttc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taaagctgtagctttaatatagtgtggatattaacgacaataaggtcactcctgcatttc 293

                                                                       
Query: 181 tgattcgttgtgctgtgctaaaatccctcctgtgtgaactgtgtgaattcatggaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgattcgttgtgctgtgctaaaatccctcctgtgtgaactgtgtgaattcatggaacatg 233

                                           
Query: 241 tggttacccagcgactgttttgcttccactca 272
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tggttacccagcgactgttttgcttccactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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