Query= MSMg01no124_c20.b1 MSMg01no124_c20.b1 CHROMAT_FILE:
MSMg01no124_c20.b1 PHD_FILE: MSMg01no124_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:55 2005
(422 letters)
>mm_chr2_103451862_103452684
Length = 823
Score = 601 bits (311), Expect = e-176
Identities = 383/411 (93%), Gaps = 9/411 (2%)
Strand = Plus / Plus
Query: 17 gaattcatttgctgggttaaaatgctcattgggagtggtaaggtggcctgtctcagatgt 76
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 217 gaattcattcgctgggttaaaatgctcattgggagtggtaaggtggcctgcctcagatgt 276
Query: 77 agcaagatgggctggcccggcctgcaaagctacagccttcactggctctcctaacaactt 136
||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 277 agcaagatgggctggactggcctgcaaagctatagccttcactggctttcctaacaactt 336
Query: 137 cccgcattgttgcccatgagaagtaagcatactgcaggaggcctgaagcaggcc-tccaa 195
|| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 337 ccttcattgttgcccatgagaagtaagcatactgcaggagtcctgaagcaggccctccaa 396
Query: 196 acaaggcaatcggatacccttgcagagcttggcttgaacatcagagaaatgtcttgttta 255
|||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 397 acaaggtaatcggatacccttggagatcttggcttgaacatcagagaaatgtcttgttta 456
Query: 256 aatgatt----aaaaaaaaaaacaaaaaacaaaaaaccattaatttacgttcattttctc 311
||||||| ||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct: 457 aatgattttttaaaaaaa----caaaaaacaaaaaaacattaatttaggttcattttctc 512
Query: 312 tggtccatgaccaccatgcatagctgtatccaagaaaccatctgaagacagcttattctt 371
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 513 tggtccatgaccaccatgcatcgctgtatccaagaaaccatctgaagacagcttattttt 572
Query: 372 cttattcaacagtctggaaatttaattgttatgccattccaacctccagtc 422
| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cataagcaacagtctggaaatttaattgttatgccattccaacctccagtc 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space: 336182
Effective search space used: 336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_c20.g1 MSMg01no124_c20.g1 CHROMAT_FILE:
MSMg01no124_c20.g1 PHD_FILE: MSMg01no124_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:55 2005
(339 letters)
>mm_chr2_103609242_103609980
Length = 739
Score = 627 bits (324), Expect = 0.0
Identities = 333/336 (99%)
Strand = Plus / Minus
Query: 1 cttaccatggatcccaggaccagcctcatcaagtgcctggtaaccaccagcaacccccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cttaccatggatcccaggaccagcctcatcaagtgcctggtaaccaccagcaacccccac 477
Query: 61 agcacaacactggctttccacgtagcagtcagccttattacaacagtcgtggggtatctc 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agcagaacactggctttccacgtagcagtcagccttattacaacagtcgtggggtatctc 417
Query: 121 gaggagggtctcgtggtgccagaggcttgatgaatggatacaggggccctgccaatggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaggagggtctcgtggtgccagaggcttgatgaatggatacaggggccctgccaatggat 357
Query: 181 ttagaggtaagcaaataataaggcaacttctgatgaattttgcagtttcaagtctttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttagaggtaagcaaataataaggcaacttctgatgaattttgcagtttcaagtctttcct 297
Query: 241 gacttgtaaaatgagaagtgtgtctcagaattttgggaaagaattacttctctgcattaa 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 296 gacttgtaaaatgagaagtgtgtctcagaattttgggaacgaattacttctctgcattaa 237
Query: 301 tatatatattttaaacatttacgtgtgtgctgaatg 336
||||| ||||||||||||||||||||||||||||||
Sbjct: 236 tatatctattttaaacatttacgtgtgtgctgaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
