BAC Information

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BAC

Clone NameMSMg01-124D19
Chromosome2 (Build37)
Map Location 7,889,673 - 7,890,008
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124D19.T7 (MSMg01no124_d19.b1)MSMg01-124D19.TJ (MSMg01no124_d19.g1)
ACCAG333641AG333642
length1,2441,293
length of high quality
(start - end)
333 (117 - 449)332 (120 - 451)
definitionCHROMAT_FILE: MSMg01no124_d19.b1 PHD_FILE: MSMg01no124_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:04 2005CHROMAT_FILE: MSMg01no124_d19.g1 PHD_FILE: MSMg01no124_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCT
GAGAAATTCCCCATTAAAATAGAAGCACCTGAAAAAATGTTCAATATCCT
TACCCTTCAGGGACATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCAAAGATCAAAAATCCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGAAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGAC
ATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGA
AGAACTACCAACCGGTAAAGACACATGCTCCACTATGTTCATAGTTTTCT
TATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGGCCCCCAACAGAG
GAATGCATACAGAAAATGTGGTACATTTACACAAAGGAGTACTACTCAGC
TATTAAAAAGAATGAGTTTATGAAATTCCTAGCCAAATGGATGGACCTGG
AGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCATACAAT
ATGTACTCACTGATATGTAGATATTAGCCCAGAAACTTAGAATACCCAAT
GGATATGATATAATTTCCTAAATGCATGAAACTCAGGAAGAACGCAGACC
AATGTGTGGACACTTTGCCCCTTCTTAGAATTGGGGAAAAAACTACCATG
GCAAGGAGTTACAGATACTAAGTTTGCAACCTGTGAGAAGGATGGCATCA
TCTATAAACTGCCATATCCAGGGGATCTACCTCAAAACCCGCCCTCCAAC
GCTGACCCCATTCGCCTCCCTTACAAGATTTTGCTGAAAGGACCCATAAA
CTTTCTGGCCCCTTGCGATAACTAGCCGTCTCCCAACAAACTCTCAATTG
GATGCCTCCCACTCCTCCTTTTCGCTGTATCACAGGACTCCCCATGGGAG
TAGTCTTAAAAAATAACCCCATGTAGTTGAAGTGACCTCTGCATCCTCAC
GTGCGGGCACTATCATTTCTACCCACCCTTAACCCCCTCGAATCTTCCGT
TCCCCCCCTTCCTTTGTATTCTATAATGTGGCCTCTATTGTGCTCCTTCA
AGCGTAATTAAATAGCCCTTCATACCCTCCTCTACTTTTTAAGTCCTCTA
GGTTCATTTCTCTGCGGTTTCTTTCTCTCGTGCACACTATATAC
TTTTAACATGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTGGAACCAATTTCAAAGTCATATTATGGAG
AAAGAGACCTTTAAGGAGTCATTTATCAGAGTAGNAAATGCTTTTCCAGC
CACACACCAAATACTCAGAGATGGGAACAGCCCCCATTATTCTCCAACTG
CTCTCAATTTTGTTTTATTATGGCTATAAAAACACCTGTCCTTTCTGTTT
TAAGTAAGAACTACCAGGGATGATGCTAAGGGCAACATGCCTTTTCAAGA
CCAGGGGGAAATTTTCTTCTGCATATATGCTTTGTTTGTTTGTTTGTTTT
GTCTTTTATGGTAACTGAAAATAAGAGAACTTTTGCTGCCAGTTCCATGT
TTATTCTATCAGTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTT
TTTTTTCTTCCCCCCTTCCTTCCTTCCTTCTTCTAAAAAAAAGGGGTTGG
ATATCATGAAGTTCTGAGATATCTTCTTTTCTCAGGAAAATGACCAGCAC
AGGATTTCTGTGAACTCTTCTGTATTTTGTATTTCCTCTATTATCTGAGC
CTTTTATCATCATTCTGCCTTGATTTGTGATAGTAATTCCACTTCTACCT
TTGATGCTTCTCCCAAGTATGTGTGATGAATTACATGGTTTCTTAGTTAT
TCTTTGTGGTTTCTATGTTATACCATTTTAATGTCATATAATTTTTTTAT
GCTCTTTGAAACGTTACACATATTATGTAAATCATCTCGGCTCTCTCATT
GGTTTTTATATATTTAATCTGCTTATTGTTGATAACCTTTTCCCCTTAAT
ATTTTTCCTTTGTGTTAGTATCCTAATTTTATTATCTTATTTCTATTTTC
TATGCTCTTTGTTATAATATACTCTTCTTTTTTCATTCATTTCTTAAAAA
TTATTTTCTCTATTGGATAATTCTGATTGTTATTATTATTTGTTAATTAA
AATTAATCTTTATTTATATTCTACTTTTCTATATACTTATCTCCTTCTTT
ATTTTCGTTCTCATTTTGATATCTCTCTCTCTTGGTTGTAAAATCTCTGT
TATTTTCTCAGTTTATGTTTTCTTTTCTTATTAATTCTATAGTTATTTGG
TTTTTCTGAGATCCCACTTATCATTGGATCCTATATTATACTGTATCTCT
TTTATTACAATCTATATCCCGTTCTTTCTCTATTCCTCTCTCATATGTAA
CTTTATTATACTCTTTACTACACTCTTCCTCTCCTCATCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_d19.g1 MSMg01no124_d19.g1 CHROMAT_FILE:
MSMg01no124_d19.g1 PHD_FILE: MSMg01no124_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:04 2005
         (332 letters)



>mm_chr2_7889579_7890310
          Length = 732

 Score =  540 bits (279), Expect = e-158
 Identities = 318/336 (94%), Gaps = 8/336 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   atttatcagagtagnaaatgcttttccagccacacaccaaatactcagagatgggaacag 61
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 430 atttatcagagtagcaaatgcttttccagccacacaccaaatactcagagatgggaaaag 371

                                                                       
Query: 62  cccccattattctccaactgctctcaattttgttttattatggctataaaaacacctgtc 121
           ||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 370 ccagtattattctccaactgctctcaattttgttttattatggctataaaaacatctgtc 311

                                                                       
Query: 122 ctttctgttttaagtaagaactaccagggatgatgctaagggcaacatgccttttcaaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 310 ctttctgttttaagtaagaactaccagggatgatgctaagggcaacatgccctttcaaga 251

                                                                       
Query: 182 ccagggggaaattttcttctgcatatatgc--------tttgtttgtttgtttgttttgt 233
           ||||||||||||||||||||||||||||||        ||||||||||||||||||||||
Sbjct: 250 ccagggggaaattttcttctgcatatatgctttgtttgtttgtttgtttgtttgttttgt 191

                                                                       
Query: 234 cttttatggtaactgaaaataagagaacttttgctgccagttccatgtttattctatcag 293
           ||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||
Sbjct: 190 cttttatggtaactgaaaataagagaacttttgctgccagttccatgtcaatcctatcag 131

                                               
Query: 294 tttccttccttccttccttccttccttccttccttc 329
           ||||||||||||||||||||||||||||||||||||
Sbjct: 130 tttccttccttccttccttccttccttccttccttc 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)