BAC Information

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BAC

Clone NameMSMg01-124F14
Chromosome2 (Build37)
Map Location 55,572,720 - 55,573,571
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124F14.T7 (MSMg01no124_f14.b1)MSMg01-124F14.TJ (MSMg01no124_f14.g1)
ACCAG333725AG333726
length1,2411,257
length of high quality
(start - end)		827 (53 - 879)666 (83 - 748)
definitionCHROMAT_FILE: MSMg01no124_f14.b1 PHD_FILE: MSMg01no124_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:20 2005CHROMAT_FILE: MSMg01no124_f14.g1 PHD_FILE: MSMg01no124_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAATTATNNNNNAATCAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGAACCCTTAAGTAATTTCACAATTATTATATTCTA
CCTGATATATAAACATATCCTATTATACAATAGAAATAAATTGCATGCAT
CTTTGGATGGAAGAAACAGAAAAATTAATAATATATTCAAAGCCATATCC
ATCCATATTGATTCAATATGGAAATTTTTATTACACAAAAATGGAGAAAA
ATGTAGACACTGTCAGAGGCTGTTATTTATATATATATCCATGTGATGAA
ACTATATATAATGCATGTTCATAGTGACACATGGATTATATTACATTCAA
CATCGTATTGGGATATAATATGCTAAAGATGTAAAGAAGTAAATACCATG
TGAAATCCAGAGTGATTTTTTTTTATTATTTTAAGTTTTACAGCTTAGAG
TAGAAAAAAAAAGTTGTAGCTCACGCTTAATTATAGAGTTGCAAGAGCAG
CCCTGTAATTAGAGCTGTGAAAATTGGTGACAAATTCTCTTTGTAGTTTG
AAGGAGTAAAAAATCGTACTTATAGTATTTGATTTGAGTCAACATACAAC
TCCAAAGGGATACAGTAACTCCTTTATAGATATCTAACACTTCAAATATG
ACAACTGTTAGTTGTTATCCTTCTAATATGTGGTAGCCATTTAAAATATC
TCTTTCATGTGTCTAATAGGTTACCATTTTTCTTCCCTGTGTACAAATTT
ACACTCAATTTATGAGAGATGTAGTCAAGATTTAATGACAAAAATAACAC
TAGAGTCAATGTTTCTACCTCAAGTTTTATATCACCTGAAAATTAATCCA
ATTATAAATAATCAATACTAATGATTTTAAAATATCAAAAGGTCTAGTTT
TTCTATTTCATAAGGGTTTATCACAACTCTGAAAGATAAATGATCCTTAG
GATCTATTTATCCATATATGTTTGTGTGTATGTGTGTGTGTGTGTGTGTG
TCGTTCTCCCTCCCCCCCCCTCCCCTCTNTTCCTTTCCCTTTCTCTCTCT
TCTCTCTCTTCTCCTTCTCCTCTTCTTTCTCTCCTTCTCTTTTCTCTTCC
CTCTCCTTCCCTTTTCCTTNCTTTCCTTTTCTCTTTCCTCCTTCTTTTTC
CTCCTCCTCCTTTTCCTCCTTCTCCTCCTCTTTTTCTCTCNCTTTTCTCT
TCTTTTCCTTCTTCTTCTTTTTTTCTCTTCCTTTCCTTTCC

NCCCGATTATTTTTNNTAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTTAGCC
CAGAAGGTACTCTACCCAACCTCATTCTATGAAGCCACAATTACTCTGAT
ACATAAACCACAGAGAGACCCAACAAAGATAGAGAACTTCACATCGATTT
CCCTTATGAATAGCAATGCAAAAATGCTCAATAAAATTCTTGCTAACTGA
ATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAG
GATGGACCATCTAGATACTGCCATTCCGAGGGATCCATCCCATAATCAGC
CTCCAAATGCTGACACCATTGCACACACTAGCAAGATTTTACTGAAAGGA
CCCTGATATAGCTGTTTCTTGTCAGGCTATGCTGGGGCCTAGCAAACACA
TAAGTGGATGCTCACAGTCTGCTATTGGATGGATCACAGGGCCCCCAGTG
GAGGAAGTAGAAAAAGTACCCAAGGAGCTAAAGGGGTCTGTAAGCCTATA
GGTGGAACAGTGAATTGAAACAATATGAACTAACAAGTACCCCTGGAACT
AGTGAATCTTGCTGCATATGTATCAGAAGATGGCCTAGTCATCCATCAGT
GGAAAGAGAGGCCCATTGGTCCTGCAAACTTTATATGCCTCAGTACAGGG
GATTGACAGGGCCAAGAAGTGGGAGTGGGTTGGTAGGGGAGTAGGGGGNN
TTTTTCTTTTTTTTTTTTTTTTCTTCTCTCTCTTTCTTTTTCTTTTTCTT
CTCCTCTTCTTCTTCTTTCTTTTTTTTTTCTTTTCTTTCTCCCTCTTTCT
CTTTTCTCTCTTTCTCCCTCCTCCCTTCTCCCTCTTTACTCTTTCTCCTT
TCTTTCTCTTCCTCCTTCTTTCTTCCCTCTCTCTCTTTTTTCCTCCTTCT
CTTTTCTCTCTTCCTTTTTCCTTCCCTCTCTTTTTTTTCTCTTCTTCCTT
TTCCCTCCTCCTTTTTTCTTCTTCTCTTNCTCTCTCTTCCCTTCTCTTTC
CTTTCCCTCTCTTTCCNTTCTCNTCTCTTCCTTTTTATCCTTTACTCTTC
TTTCTTCTCTTTCTCATTTACTTCCTCCTTCCTCTCTTCCTTCTTACTCT
ACCTCTTCTCCCTTTCTTCTTTTTACTTTCTCCTTTATCTCTTTTCTCTA
CTCTTTTATCCATCTTTTCTCTCTTATTACTTCTCTTCNTCCTTTCTTAT
TTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_f14.b1 MSMg01no124_f14.b1 CHROMAT_FILE:
MSMg01no124_f14.b1 PHD_FILE: MSMg01no124_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:20 2005
         (827 letters)



>mm_chr2_55572542_55573771
          Length = 1230

 Score = 1421 bits (735), Expect = 0.0
 Identities = 811/853 (95%), Gaps = 31/853 (3%)
 Strand = Plus / Plus

                                                                        
Query: 5    gaattctttgaacccttaagtaatttcacaattattatattctacctgatatataaacat 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179  gaattctttgaacccttaagtaatttcacaattattatattctacctgatatataaacat 238

                                                                        
Query: 65   atcctattatacaatagaaataaattgcatgcatctttggatggaagaaacagaaaaatt 124
            ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 239  atcatattatacaatagaaataaattgcatgcatctttagatggaagaaacagaaaaatt 298

                                                                        
Query: 125  aataatatattcaaagccatatccatccatattgattcaatatggaaatttttattacac 184
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299  aataatatactcaaagccatatccatccatattgattcaatatggaaatttttattacac 358

                                                                        
Query: 185  aaaaatggagaaaaatgtagacactgtcagaggctgttat-------------------- 224
            ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 359  aaaaatggagaaaaatgtagacactgtcagaggctgttatatatatatatatatatatat 418

                                                                        
Query: 225  -----t-tatatatatatccatgtgatgaaactatatataatgcatgttcatagtgacac 278
                 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 419  atatatatatatatatatccatgtgatgaaactatatataatgcatgttcatagtaacac 478

                                                                        
Query: 279  atggattatattacattcaacatcgtattgggatataatatgctaaagatgtaaagaagt 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479  atggattatattacattcaacatcgtattgggatataatatgctaaagatgtaaagaagt 538

                                                                        
Query: 339  aaataccatgtgaaatccagagtga-tttttttttattattttaagttttacagcttaga 397
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 539  aaataccatgtgaaatccagagtgattttttttttattattttaagttttacagcctaga 598

                                                                        
Query: 398  gtagaaaaaaaaagttgtagctcacgcttaattatagagttgcaagagcagccctgtaat 457
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 599  gtagaaaaaaaaagttgtagttcacgcttaattatggagttgcaagagcagccgtgtaat 658

                                                                        
Query: 458  tagagctgtgaaaattggtgacaaattctctttgtagtttgaaggagt--aaaaaatcgt 515
            ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |
Sbjct: 659  tagagctgtgaaaattggtgacaaattctctttgtagtttgaaggagtaaaaaaaatctt 718

                                                                        
Query: 516  acttatagtatttgatttgagtcaacatacaactccaaagggatacagtaactcctttat 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  acttatagtatttgatttgagtcaacatacaactccaaagggatacagtaactcctttat 778

                                                                        
Query: 576  agatatctaacacttcaaatatgacaactgttag-ttgttatccttctaatatgtggtag 634
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 779  agatatctaacacttcaaatatgacaactgtt-gattgttatccttctaatatgtggtag 837

                                                                        
Query: 635  ccatttaaaatatctctttcatgtgtctaataggttaccatttttcttccctgtgtacaa 694
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  ccattttaaatatctctttcatgtgtctaataggttaccatttttcttccctgtgtacaa 897

                                                                        
Query: 695  atttacactcaatttatgagagatgtagtcaagatttaatgacaaaaataacactagagt 754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  atttacactcaatttatgagagatgtagtcaagatttaatgacaaaaataacactagagt 957

                                                                        
Query: 755  caatgtttctacctcaagttttatatcacctgaaaattaatccaattataaataatcaat 814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 958  caatgtttctacctcaagttttatatcacctgaaaattaatccaattataaataatctat 1017

                         
Query: 815  actaatgatttta 827
            |||||||||||||
Sbjct: 1018 actaatgatttta 1030


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 827
Length of database: 1230
Length adjustment: 10
Effective length of query: 817
Effective length of database: 1220
Effective search space:   996740
Effective search space used:   996740
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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