Query= MSMg01no124_g03.b1 MSMg01no124_g03.b1 CHROMAT_FILE:
MSMg01no124_g03.b1 PHD_FILE: MSMg01no124_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:25 2005
(714 letters)
>mm_chr2_104989759_104990872
Length = 1114
Score = 1272 bits (658), Expect = 0.0
Identities = 701/722 (97%), Gaps = 13/722 (1%)
Strand = Plus / Minus
Query: 1 gcattatttaatagtcaatagaaaggtaactggcattgtggaccctgtttgttcca---- 56
||||||||||||||||||| |||||||||| | ||||||||||||||||||||
Sbjct: 933 gcattatttaatagtcaat----aggtaactgg-agtgtggaccctgtttgttccatcca 879
Query: 57 ----gttctcactaaaccttgactatattccccttcaggacgtttaataagggactcagt 112
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 878 catggttctcactaaaccttgactatattccccttcgggacgtttaataagggactcagt 819
Query: 113 ggttcgtagccaggcctcccactgtatcaatcagccttaagagccatcaaaaccctcacc 172
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggttcgtagccagtcctcccactgtatcaatcagccttaagagccatcaaaaccctcacc 759
Query: 173 acatgcaatgctcctccagctcctcccggctgatctcacccagagcagatgctctattac 232
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 758 acatgcaatgctcctccagctcctcccagctgatctcacccagagcagatgctctattac 699
Query: 233 ccagtgtccaccggccctggatgcttagcaggacagcttgaggacttttaggaactctcc 292
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 698 ccagtgtccaccggccctggatgcttagcaggacagcttgaggacttttagaaactctcc 639
Query: 293 tttctgcatgaacacacagactcaggaactcatagtctcatggaccacctcatcagacca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttctgcatgaacacacagactcaggaactcatagtctcatggaccacctcatcagacca 579
Query: 353 cacaggaaaactctggactctcctcatacatcactggcagtgaggtgctaacttaccaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cacaggaaaactctggactctcctcatacatcactggcagtgaggtgctaacttaccaga 519
Query: 413 atccctagttcatccaacttgctgggttcttctgtattcttgatggtttggctctatagc 472
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atccttggttcatccaacttgctgggttcttctgtattcttgatggtttggctctatagc 459
Query: 473 cagacgcgtctactggctctaccagaagagcagtgccctaaacctaaatgataggtgatg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cagacgcgtctactggctctaccagaagagcagtgccctaaacctaaatgataggtgatg 399
Query: 533 ccatgcactcttgcatctgagaaaagctattccaaccatatgaaagcttctaggaaagaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ccatgcactcttgcatctgagaaaagctattccaaccatatgaaagcttctaggaaagaa 339
Query: 593 ccaatggttctcaaagctcaggttctggatcagcacgggattctggagactcctgaattt 652
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 338 ccaatggttctcaaagctcaggttctggatcagcacggggttctggagactcctgaattt 279
Query: 653 ccagttgcaatagaggcacatgggagagatggctcagcagttaagaacactgactgctct 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccagttgcaatagaggcacatgggagagatggctcagcagttaagaacactgactgctct 219
Query: 713 tc 714
||
Sbjct: 218 tc 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no124_g03.g1 MSMg01no124_g03.g1 CHROMAT_FILE:
MSMg01no124_g03.g1 PHD_FILE: MSMg01no124_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:25 2005
(711 letters)
>mm_chr2_104900032_104901142
Length = 1111
Score = 1274 bits (659), Expect = 0.0
Identities = 692/703 (98%)
Strand = Plus / Plus
Query: 6 agaaggaataaatggggtttgagaaaaatctgccacgcatgtagctggtgtgtgttggaa 65
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 206 agaaggaataaatggggtttgagaaaaatctgccacggatgtagctggtgtgtgttggaa 265
Query: 66 aatgctgtgtagatcgtttctgcggacacaatttggatgttgcggcctcagtttctcatg 125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatgctgtgtagattgtttctgcggacacaatttggatgttgcggcctcagtttctcatg 325
Query: 126 gcctcagggatgctttcaggctgccttgccttctctttgtatcttgccacctgtctaaaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcctcagggatgctttcaggctgccttgccttctctttgtatcttgccacctgtctaaaa 385
Query: 186 cacaggactgggaagtgagctccagacatgaagcctgggtggagggtatgtagcaggtag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacaggactgggaagtgagctccagacatgaagcctgggtggagggtatgtagcaggtag 445
Query: 246 gaccagcaaagaccttacctactgtaggcaaagtattgggtgaatcaaaaagtaacagag 305
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 446 gaccagcaaagaccttacctactgtaggcaaagtattgggtgaattagaaagtaacagag 505
Query: 306 tggagactggacactttagagggggttcaggagaggtcacaaccacaagggtcatagatc 365
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggagcctggacactttagagggggttcaggagaggtcacaaccacaagggtcatagatc 565
Query: 366 agatgtccttcagatcagatatttatattacaattcatagcagtagcaaaattataggta 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agatgtccttcagatcagatatttatattacaattcatagcagtagcaaaattataggta 625
Query: 426 tgaagtagtaacaaaatagtattatggtgggaagggtaaccacaacgtgaggaactgtat 485
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 626 tgaagtagtaacaaaatagtattatggtgggaagggtcaccacaacgtgaggaactgtat 685
Query: 486 tgagggtcacagcattaggaagggtgagaaccactcctctagaagatcctcaactctgtt 545
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 686 tgagggtcacagcattaggaagggtgagaaccactcctctagaagagcctcaactctgtt 745
Query: 546 actttttcaaagatttgtttacttttattttatgtgcatgagtgctctgcctcacgtgtg 605
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 746 actttttcaaagatttgtttacttatattttatgtgcatgagtgctctgcctcacgtgtg 805
Query: 606 tatgtggaccatgtgcctgcagaggccagaagatagcattgcatcccctggaactgaagt 665
| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 806 tgtgtgcaccatgtgcctgcagaggccagaagatagcatcgcatcccctggaactgaagt 865
Query: 666 taccatgggttgtgagccaccatgtaggtgctgggaactggag 708
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 taccatgggttgtgagccaccatgtaggtgctgggaactggag 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
