BAC Information

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BAC

Clone NameMSMg01-124L18
Chromosome2 (Build37)
Map Location 11,137,546 - 11,137,887
singlet/doubletsinglet
Overlap genePrkcq
Upstream geneItih5, Sfmbt2, LOC100040690, LOC100040703, LOC667192
Downstream geneLOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124L18.T7 (MSMg01no124_l18.b1)MSMg01-124L18.TJ (MSMg01no124_l18.g1)
ACCAG334012AG334013
length1,2481,295
length of high quality
(start - end)
545 (125 - 669)268 (128 - 395)
definitionCHROMAT_FILE: MSMg01no124_l18.b1 PHD_FILE: MSMg01no124_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:13 2005CHROMAT_FILE: MSMg01no124_l18.g1 PHD_FILE: MSMg01no124_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTCTATNNNNGAACACTGGGCGCTATAGACTACTATAGGGAGAGGATCC
GCGGAATTCAGGGAGGGGATATAACCCTTTAGGAGCTGGCCTACATGACC
TTCTATCAGTAACCTCCCTTCCTTAAAGTCTCCACAGCCTCTCCACCTAG
CATTAACAGGTTTTCTGTTTTCATTCTGTTGTTTGACAAATACCAGGATC
AAAAGATACTCAGGAAGAAAGGGTGTATTTGGCTTTCACTTCCAAGTCAC
ACTCCATCACTGAGGGAAGTCAGGGGAGGAACTCAAGCAGGAGCTTGAAC
CGGAAATTATGGAGGAATGCTGCTTCCTGACCTATAGGCTCATGCTTTTT
TATATAGGCAAAGGTCACCAGTCTAGGGAATTGTACCACCCACAGTGGAC
TGGTGCTGCTGACGTCAATCAAGACAATCCTCCTCATGCCCATAGGTAAA
GCTAATCTGGTAAATCCTTCAGTTGAAACTTTCTCTTCAGGTGACTCTGA
GCTGTGTCAAGTTGACAGTTAAATCTATCTGGGGCACCAACTAAGGGACA
CTCATTCAAAACGTGAAACTGGGGGATATTTCCAACTCAAATTATAAGAG
CAATGAATAAATCAGAGAGGGATCCCCTAATCTCTTCCACTGTGAAGATT
AAAATGTTCCTTATAGACATTTGGTCTGGATTCTCATGGAGCAGACAAGC
AGACAATGGAATTGAAACTCAGAGGAACCAACATGAGATATCTGTCTACT
CTGTGGTAGAAGAGGGAGTAGGAGCCAAGAGTCCATTGTCTTCCCACTGC
CTGAACCTACTGTTCTGACATGCATTGAGACAACTGACTGATGGGATTTG
CTCCAGTTCAAAATATTATTGCTGCTTCACACCCTAAAGCTTGGTTCAGT
CAGCTCTGACGAAAGCCCTGTCCCCCTCCAGGTCCTTTTCCTCTGTTTGC
TGTAAGGTCATGCTGTGCACCTGTTCCAACTTTGACCCTTCCCTTGCATA
AATGGATTGAAAATCTCTAAAAACTTGGTGTTTACTTGCAAAAAAAACCT
TCTTTCCTTTAAGTTTGCTTTACCCCCTGCAACTTTTTGTCACAAACTAA
ACCTGGAAACTTAATCTCAAGTGCACATCAAGTAGGTTCTTCTCTAAAAA
TAAACAAATAATGGTTGTAACCTCTCCTCATATAAGTGGGTATTTATAAA
ACCTTTGGTTTCTTTTCCCTCCCACAATTGTGGAAAACATTTTTTAAA
CGGTTTTTTNNNTACCATGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCCTTTTAATCCATGATGACTGATAGT
TTTGCTGGGTATGCCCCTTTAGGCTGCCATCTGTGTTCTTTTAGGGTCTG
CAAGACATCTGCCCAGAATCTTCTGGCTTTTAGAGTCTCTGTTGAGAAGT
CGTGTGTAATTCTGATAGGTCTGCCTTTATGTGTTACTTGACCCTTTTCC
CTTTACAGCTTTTAATATTCTTTCTTTGTTCTGTATATTTAGTGTTTTGA
TTATTATGTAGCAGGAAGATTTTCTTTTCCTGTACAATCTATTTGGTGTT
CTGTAGGCTTCTTGCGTGTTTACAGCCATCTCTTCAGGTTAGGGAAGTTT
TTTTCTATGATTTTGTTGAAGATGTTTTCTGGTCCTTTGAACTGGGGATC
TTCTTTCTTTTCCCTTCCTACTATTCTTGGGTTTTGTCTTATCATTGTGT
CCCAAATTTCCTGGATGTTTTGGGCTGGTAACTTTTTAAACTTTGCATTT
TCTTTATCCAATGTATCAACTTCTTCTACGGTATCTTCTACATCTGAGAT
TCTCTTATCTCTCTCTTGCACTCTGTTAGTGATCTGTAGTTCCTGTTCTC
TTTCCTCGGTGCTCTATCTTCATGGTTGCCTCCCTTGTGTTTTCTTTATT
GCTTCCATCTTTTAGCTCTTGGACAGTTTTCTTCATTTCCTTTCCCCTAT
TTGAATTGTATTCTTCTATCTTTTCCTTTCTGGTAATTTTTTATATCCCC
CTTTAACTGCCCTTTGTTATTTCTTACGAAATGGTTATTTATCTTTTAAA
AATTTCTCCTTCTCTTGTTTGTTTTCTTTTCCCCTTTCTCTTTTTTTTTC
TTTTTCTCCTTTTTTCTCTATCGGTTGCCCCTCTAATCTCTGTCCTCCCC
GCTTCATTTTTTCTCTCTAGTGCCTTGTTATTTCCACTGCTTCTTTTTTT
TATCCTCGTATTCTTACCATGTCCTCGTTCTTTTCCCATCTCTTGTATCT
CATGTTTTCTTTCTTCTTGTGCTATTTCCTTCTCTCCTTTCTGTTATCCT
CCTGTTACTCATTATTTCTAATATCCTCTCGTCACTTTCATCTTGTACTA
CTGTCTATCACTCTTCATTCTCTCCGTATCTCTGCCCCATTTTGTGATCT
ATTATTGTATTCTCCTCTAACCCTCTCTCTTGTCTTTTATTATCTTTCAT
CTTGTCTACTCTGCTTGATATTATTCTTCTCTCTATTCATTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_l18.b1 MSMg01no124_l18.b1 CHROMAT_FILE:
MSMg01no124_l18.b1 PHD_FILE: MSMg01no124_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:13 2005
         (545 letters)



>mm_chr2_11136943_11137887
          Length = 945

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 204 tgacctataggctcatgcttttttatataggcaaaggtcaccagtctagggaattgtacc 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 tgacctataggctcatgcttttttatataggcaaaggtcaccagtctagggaattgtacc 886

                                                                       
Query: 264 acccacagtggactggtgctgctgacgtcaatcaagacaatcctcctcatgcccataggt 323
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 acccacagtggactggggctgctgacgtcaatcaagacaatcctcctcatgcccataggt 826

                                                                       
Query: 324 aaagctaatctggtaaatccttcagttgaaactttctcttcaggtgactctgagctgtgt 383
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 aaagctaatctgggaaatccttcagttgaaactttctcttcaggtgactctgagctgtgt 766

                                                                       
Query: 384 caagttgacagttaaatctatctggggcaccaactaagggacactcattcaaaacgtgaa 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 caagttgacagttaaatctatctggggcaccaactaagggacactcattcaaaacgtgaa 706

                                                                       
Query: 444 actgggggatatttccaactcaaattataagagcaatgaataaatcagagagggatcccc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 actgggggatatttccaactcaaattataagagcaatgaataaatcagagagggatcccc 646

                                                     
Query: 504 taatctcttccactgtgaagattaaaatgttccttatagaca 545
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 taatctcttccactgtgaagattaaaatgttccttatagaca 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)