BAC Information

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BAC

Clone NameMSMg01-124M07
Chromosome2 (Build37)
Map Location 23,493,052 - 23,493,444
singlet/doubletsinglet
Overlap genenone
Upstream geneGad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149
Downstream geneSh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124M07.T7 (MSMg01no124_m07.b1)MSMg01-124M07.TJ (MSMg01no124_m07.g1)
ACCAG334036AG334037
length1,2471,323
length of high quality
(start - end)
667 (81 - 747)379 (85 - 463)
definitionCHROMAT_FILE: MSMg01no124_m07.b1 PHD_FILE: MSMg01no124_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:18 2005CHROMAT_FILE: MSMg01no124_m07.g1 PHD_FILE: MSMg01no124_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTAAACAGTGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTTAAAATTATAATAGTACTTTTTAAGCTCTTTTATAGTGAGACTGCTAT
TAGGTTATCCCTGAAAATCAAAACTGTAATGAGAACTCTGCCAGTCTTTA
GTGTCATGAGTTAATAGCTTCTGAGATAGCAGGCAGGCTTCTACTGCTCA
GAGCACATCCCAAGAGGTTATAAAGCTATTAGCCAGAGGTCATAAAAAGG
GAACTAATGATTTGCTATAGGTGGTAGGACAGAAGATAAATATTGACTGG
GTTTATCTATACAAAATTTCACTAATACCTTGGTCACAAAAGTAATGCTT
TTTAACTCTCCATAAACCTGTTGAGCTTGGGACAGATGATGAATGTTTAT
TCATATAATTACTCCTAATGGATATGCATGTAAACATTCTCTGTTGTAAA
CTTCTGATTCAATTTATGATTTGAATTTATGTCCAAACTTGTGATGAACT
TTTTACCACATGATGATATAGTCTGAAAGATATTTAAGTGTTGAGGAGAA
AGAGAAGAAGAGAACATTCTTCCTTGTTCCCCTTTCTTAGCATTGCTTAC
CCCACTTTTTTCTTAGACTCTTTTTTTTACAAGCCCCTTTCCCCTCTTTC
TTGGAGAGCTTTCATAGAAAACTTTTTAGAACTTAGATACAAAAGATAAA
AATAACTTTCAAAGTGTCCTTTTTACTCCCTGCAACTTAAACTAGAAGGC
TGACAGTTGGAGCCACGCAATAGAACAAAGGCTTCTTTACTCAGTCTTCT
GCTCTTTCAGATGAGAAGCTAAACAGTTTCTCACCTCAGAACAACTCAGA
AGGCATATCCGCTACTGAAACAAAGTGACTTATACGTAAGGCAGGTGAAT
GTTTTATTATTATACAGCCAACCCAAATACCTTGTAAGAACATATCTTAA
CCCCACCATCCCTTTTCCCCCCTCATTGCCTCAAGAAGAACTCCTGGGGC
TGGTTCCCCCCACTGACCTCTGTTAACTAAAGACCACTGAGACTTCGAAA
TCCCCACTTTACAACTACAAAAATTCCTGGGCCTTTTGGTAAAATGAACC
CATTGTTTCTTTGCCTGACCCGGCCTTAAAACCTTTTCTCAAAATCTTAN
TCCCCTGGAATTTTGCTTTACCGCTTTAGGGACTTTATATTGTATTCTCT
TCTCGTCTTTTGTTTGTCCTGTTCTAAATTCAATTTCTTCCATCTCC
AAGCTTTNNNNTAAGATTGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTCTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGGAACATTGATCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCACAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAATTTTCCCCACGCCCCTCAACAGAGAAATGGATACAGAA
AATGAGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTATGCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATACTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAATT
TGCTAAACACATGAAACTCAAGAAGAATAAAGACTGAAGTGTGGACACTA
TGCCCCTCCTTAGACTTGGGAAGAAAACACCCATGGAAGGAGTTACAGAG
ACCAAGTTTGGAGCTGAGATGAAAGGATGGACAATGTAAAGACTGCCCTA
TCCAGGGATTCACCCCCCAAATCAGCAATCCAAACGCTTGACACCATTTG
CAACCCCTAGTCAAGCATTTCTTTGAAAGGTACCCTTAACCTAGCTTATC
TCTTGTGAGAATTATGTCCGGGGCCCACCAAAACTCATAACTTGGATGCT
CCACAGTCAGCCTAATGGATGGCATTCCAGGGCTTCCCCAATGGCAGGAA
TTTTGAGTAAAGAACCCCAACGTATCTTTAAGGCGAATTCGGCAACCCTA
TTAAGCGGGGATCACACTTTCTGTAAACTTATCCTGGTTCCCCGGAAGCT
TCTTGACCTCCTAACTGTGCATAGTGTACACAAAAATATGGGCCCAAATT
GCGCCCTCTCCTGTGATAAAATAAGCCCCCTTTGTTTACACTCTATAATT
TTTATATGTCCCCTTTCTCAAGGTGGTAATACCTCGTGCTCTAATATTGT
GTGTTCTTTTTGTGTTTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_m07.b1 MSMg01no124_m07.b1 CHROMAT_FILE:
MSMg01no124_m07.b1 PHD_FILE: MSMg01no124_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:18 2005
         (667 letters)



>mm_chr2_23492374_23493444
          Length = 1071

 Score =  683 bits (353), Expect = 0.0
 Identities = 382/393 (97%), Gaps = 4/393 (1%)
 Strand = Plus / Minus

                                                                        
Query: 279  tccataaacctgttgagcttgggacagatgatgaatgtttattcatataattactcctaa 338
            |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1071 tccataaacctgttgaacttgggacagatgatgaatgttgattcagataattactcctaa 1012

                                                                        
Query: 339  tggatatgcatgtaaacattctctgttgtaaacttctgattcaatttatgatttgaattt 398
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1011 tggatatgcatgtaaacattctctgttgtaaacttcttattcaatttatgatttgaattt 952

                                                                        
Query: 399  atgtccaaacttgtgatgaactttttaccacatgatgatatagtctgaaagatatttaag 458
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  atgtgcaaacttgtgatgaactttttaccacatgatgatatagtctgaaagatatttaag 892

                                                                        
Query: 459  tgttgaggagaaagagaagaagagaacattcttccttgttcccctttcttagcattgctt 518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  tgttgaggagaaagagaagaagagaacattcttccttgttcccctttcttagcattgctt 832

                                                                        
Query: 519  accccacttttttcttagactc---ttttttttacaagcccctttcccctctttcttgga 575
            ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 831  accccacttttttcttagactctttttttttttacaagcccctttcccctctttcttgga 772

                                                                        
Query: 576  gagctttcatagaaaac-tttttagaacttagatacaaaagataaaaataactttcaaag 634
            ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 771  gagctttcatagaaaacttttttagaacttagatacaaaagataaaagtcactttcaaag 712

                                             
Query: 635  tgtcctttttactccctgcaacttaaactagaa 667
            |||||||||||||||||||||||||||||||||
Sbjct: 711  tgtcctttttactccctgcaacttaaactagaa 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1071
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1061
Effective search space:   697077
Effective search space used:   697077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)