BAC Information

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BAC

Clone NameMSMg01-125A19
Chromosome2 (Build37)
Map Location 154,253,034 - 154,253,215
singlet/doubletsinglet
Overlap genenone
Upstream gene8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
Downstream geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125A19.T7 (MSMg01no125_a19.b1)MSMg01-125A19.TJ (MSMg01no125_a19.g1)
ACCAG334244AG334245
length705735
length of high quality
(start - end)
332 (14 - 345)183 (87 - 269)
definitionCHROMAT_FILE: MSMg01no125_a19.b1 PHD_FILE: MSMg01no125_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:57 2005CHROMAT_FILE: MSMg01no125_a19.g1 PHD_FILE: MSMg01no125_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACACTCCTATAGGGAGAGATCCGCGGAATTCCACCAGTGGCAGA
GGCTGCCACCGATTCTAGTTGCTCCCAGGCCTTACATCGTTCATGCTCCT
CTCCCCAAAGCCTGGCCAAAAAGCACCTCCCCTCTCATCCCCTCCTCTTC
CTCCTGGGACCAGAAATCCCACCTTTTCCTGTTTGCCCAATGATAAGCTT
CTTTATTGACACAATCAAGAACCAATTAGGGAAATAACACCTTCACCTAC
GTGTGTGTTCCTAGCCAAAGGCAAAATAGAGATCTGAAACAGGGACAGAG
GTATCCAAGGTCATACTTGAGGAAATGGGGTAAAAAACCATGCTCTTTAA
TAATTTTCCCCCCCCCCCACCACCACAAAGCATTCTCAGGTTTTTAAAGA
GAAAGCACCCTGAAAAAAAATAGAATGGGGGGGGAGAGACTCAAATCCTT
GGTAGTCTGGTCCCTGGGCCCGGCCTTTGCCATTCTTCCCTGATAAGTTA
TCTGCTCTGCTGATATTAGTTTAAGAAGCGGAAGGAACCACAGCTTCTCC
TCCTTGCAATTTGGAACTCCCTGCCAAACGAGCGGAAAGCCCTCCTTACC
AGTTTAACCCTCCCAAGAGTTCCAACTTCGCTCTCTACATGGACATGACC
TTAGTCGGGGAAATCTCCCCCTCCCATTTTCGATCCGGACGCACTCCATA
ACGCA
TATTCCNAACAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGACCTGTGTACA
TACTAAGCAAGTGCTTCACTCTCCAGCTACACTCCCCAGTCCCTATTTAT
GGCTACTGGTGAGCATTTACTATGTGACTGCAAGACTGGAGGACAGGAGA
AGGAGCTCTGCTGGTATAATGGTGCAAACCTGTAATTCCCTTCGCTCCAA
ATAGGAGAGGTAGGAGGATCAGGAGTTCAAAGTCAGCCTTTACTACAAAA
CAAAACACAAGGCCCCGCCAGGATTACGCTAAACCCTATTTTTTACACAA
ACCAAAAAAACCTACTAGTGTGCTTGATTTTTTTTTCTGCCCCCCCCACC
CCACTATGATTATTTAATTTTAATTTAAATAGCTCGATGTGCATAAAAAA
TACAAGATGGCGGGAGAGGGAGGCTCGCTTTGCCCAGCTGCGTTCCACAC
CCAGCCCCGTCCACACAATATAATTACCCCCATATACAACCAAATACCCC
TCCCCGATCACCGGCGCCTTCCCAACCCCCTTCCCCCCCCACCCTTACCT
GCTCTCCCCACCTGCCCCCCTATGCTAACCCCCCCCTTCACTTCCAAGAC
CCCACTCCTTGCCCCCCCCCTATGCTGACCTTTCTCCCCCCTTCAACTCC
CCCCTCCCAAACTGCGCAGCGCCCCCCCCCCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_a19.g1 MSMg01no125_a19.g1 CHROMAT_FILE:
MSMg01no125_a19.g1 PHD_FILE: MSMg01no125_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:57 2005
         (183 letters)



>mm_chr2_154252833_154253415
          Length = 583

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggacctgtgtacatactaagcaagtgcttcactctccagctacactccccagtccctatt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggacctgtgtacatactaagcaagtgcttcactctccagctacactccccagtccctatt 324

                                                                       
Query: 62  tatggctactggtgagcatttactatgtgactgcaagactggaggacaggagaaggagct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatggctactggtgagcatttactatgtgactgcaagactggaggacaggagaaggagct 264

                                                                       
Query: 122 ctgctggtataatggtgcaaacctgtaattcccttcgctccaaataggagaggtaggagg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgctggtataatggtgcaaacctgtaattcccttcgctccaaataggagaggtaggagg 204

             
Query: 182 at 183
           ||
Sbjct: 203 at 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)