BAC Information

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BAC

Clone NameMSMg01-125B03
Chromosome2 (Build37)
Map Location 159,001,025 - 159,001,439
singlet/doubletsinglet
Overlap genenone
Upstream geneD630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125B03.T7 (MSMg01no125_b03.b1)MSMg01-125B03.TJ (MSMg01no125_b03.g1)
ACCAG334259AG334260
length708696
length of high quality
(start - end)
---417 (123 - 539)
definitionCHROMAT_FILE: MSMg01no125_b03.b1 PHD_FILE: MSMg01no125_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:59 2005CHROMAT_FILE: MSMg01no125_b03.g1 PHD_FILE: MSMg01no125_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATACAACCTGCAAGTAGGCCTACTTGATTTA
AGCATCCACAAATTAGTTTCCTAGACTATACTTGTATCATGTCGAAATTC
TCCTCATGATACTATCCTTAAACAAAGACTGTAAACTCTGTTTTGCCTAA
TAATAAAACTGACTCACATTACTTACTGAGGGATCACAGTACTACTTTCC
ATACAAATGAACATGCCTTACCGTATAATTAACAGTTCCATCTTAAGCCT
AGTTATGTCCATTGTTAACATTTTTGTGTCTGACTCTTACACAGACACTC
ATCCTTCTGTGTCTCATTGTCCTTTCCAAGGGAAGAAATGAGATCTGATC
AATGTCTCTCTGCAGTGATGTGTCCAGGATCACAATAGACAAGGCTGTAC
TACGTCAACACAGGGACCCCAGATCTCCACAAAGCGAAGTACTGACAGCT
CGCTTCTCATTTACCCAAAGATCAGGCCCGATGATCATGGGCTTTAGTTC
GATCGCTCGCTTATTAGTTTCGTAATGCCGATTTGTTTATTAGAGTACCT
TGAGTCTCACCCTAAAGCTACCCTGGGAAGCTCTCCATTGTCAATCCCGT
CCACTTAA
CCCCGATGCTAGGGTAGCCTGGCGCCGCCTGTTCCCAAATTGAGGTGACC
TATAGAAGATCCCCGGAATCCTATGACTGTGCAACTTTTGTCCCAATCAT
CTTGGAATGCCTACAGCTGGAGTCACACTATCGGCTGACCAGGCACAGCT
GTCCTTTGCTTGAAGGCAACACGCTGCTCATGATCCCAAGTAACCACCTA
TATTTGAGACTAATCACCACGTGAAAGATGCGAAAGAAGGTTTGTTTGTT
GAAAACGCTTCTCCTCTATCAGCTCACTAAACTCCCAGTCTTTCTCAACC
CAGAAGAGCCAAAAATATAGTTGCAAAAGAGTCCATGAATAATCCCAGAG
AGCCCTCATGCCCCAAAACATTCATAGTAGGCCACCTTAAAGATACCCTG
GATGATAAGCCCTCAAATAATACTTCTTTTTGCACAACATGGTTAGGAGA
GACTGGACCAGACATTCTCCTTTGGATCTAAGCACCATGTTTCTATCCAT
TTGACATGTGCTTTAGGAAAAAATATTTTACTTGTTTAAAAGTTTTTTCT
GACTTTTGCTTCCTATAACTGATGAAAGGAAATAAATGTCTAGCAAGCCC
TCCTTTTCAACACTGCTAAACATGTATGCTCTAAACAATACAGGTGCCCA
TCGCAAAACGCTTAAGGCTCTAAATGCACAATACCATTTGATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_b03.g1 MSMg01no125_b03.g1 CHROMAT_FILE:
MSMg01no125_b03.g1 PHD_FILE: MSMg01no125_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:59 2005
         (417 letters)



>mm_chr2_159000825_159001642
          Length = 818

 Score =  748 bits (387), Expect = 0.0
 Identities = 408/415 (98%), Gaps = 1/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacactatcggctgaccaggcacagctgtcctttgcttgaaggcaacacgctgctcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcacactatcggctgaccaggcacagctgtcctttgcttgaaggcaacacgctgctcatg 556

                                                                       
Query: 61  atcccaagtaaccacctatatttgagactaatcaccacgtgaaagatgcgaaagaaggtt 120
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atcccaagtaaccacctgcatttgagactaatcaccacgtgaaagatgcgaaagaaggtt 496

                                                                       
Query: 121 tgtttgttgaaaacgcttctcctctatcagctcactaaactcccagtctttctcaaccca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 495 tgtttgttgaaaacgcttctcctctaccagctcactaaactcccagtctttctcaaccca 436

                                                                       
Query: 181 gaagagccaaaaatatagttgcaaaagagtccatgaataatcccagagagccctcatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 435 gaagagccaaaaatatagttgcaaaagagtccatgaataatcccagagagcccccatgcc 376

                                                                       
Query: 241 ccaaaacattcatagtaggccaccttaaagataccctggatgataagccctcaaataata 300
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccaaaacattcacagtagtccaccttaaagataccctggatgataagccctcaaataata 316

                                                                       
Query: 301 cttctttttgcacaacatggttaggagagactggaccagacat-tctcctttggatctaa 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 315 cttctttttgcacaacatggttaggagagactggaccagacatctctcctttggatctaa 256

                                                                  
Query: 360 gcaccatgtttctatccatttgacatgtgctttaggaaaaaatattttacttgtt 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcaccatgtttctatccatttgacatgtgctttaggaaaaaatattttacttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space:   330072
Effective search space used:   330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)