BAC Information

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BAC

Clone NameMSMg01-125D22
Chromosome2 (Build37)
Map Location 146,552,619 - 146,715,552
singlet/doubletdoublet
Overlap geneLOC668918, Gm114
Upstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125D22.T7 (MSMg01no125_d22.b1)MSMg01-125D22.TJ (MSMg01no125_d22.g1)
ACCAG334387AG334388
length734712
length of high quality
(start - end)
573 (45 - 617)451 (71 - 521)
definitionCHROMAT_FILE: MSMg01no125_d22.b1 PHD_FILE: MSMg01no125_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:13 2005CHROMAT_FILE: MSMg01no125_d22.g1 PHD_FILE: MSMg01no125_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,552,619 - 146,553,190)(146,715,102 - 146,715,552)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCGGCGGAATT
CTGTATTACTCTCGCATCGATTTTCTAGTAATTCTGCTGGGCTCATTCCT
CCAATAATAATGTAATATCATGATGCCAAACATATTTTTGAATTATGATA
ATAGCTTCTTAGAGGGTCATTAACCTCGGCATTGATCACAGGTCTAGTTG
TATGCCAACAGGATACTCAGTGATGTTTGACAGTGTAAATGTCACATTGC
TGCTGTAACAGGCTACCCCAAACACAGTAACTTAATAATAGTGAAGATCT
GTTTCCTGCCAGTTCTGCAGGTCATGCGTTTTAAGTGGGTCCTAAAGGAC
TGAACACCAAGGGAGCTAGGCTGATTCTCCTAGAAGCTTCAGAAGGAATT
TGTCCCTTGTCTCTTCTGGATGTTGGGTTCTATGGTTGCCCTTCCTTCAG
CCTTGGCCCTGATACTCTCATTATTCCACTCTGGTATCTCCTTCAGGCCC
ATCCAGACACTGCATTATATTCTCTGCATTTTAAGACACTGAGCTTAATC
ACATCTAAATGGCCTTTCCAAGATGTAGTAGACAATGTTAGAGTGGGAAA
AACCTCTACTGGTTAAGAGACTAGAATCTGTGACCTTGGTGGAGACATAA
CATTCTAGTTGGGCCAGGGCAATCATGAAAGACAGAGACCAACCCTAGGA
TGACAGGCTAAGGTTAAGGCTGACCTTACCTTAC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTTTTGAAACATTTCTATAAACACATAT
AAGAAGTCATTAGGATGAAACTCATTAAGTCACTTCTTTGTTCAATGAGA
AATTTATAGATCACAGTGAGAAAAGGAGGCACTATGAAAATCAATAAACA
AACTCGGTCTGTCATCTCACCTGAGGAAGCTTCCCAAGCAGAATGCTTCT
CTCCAGCCCACTTCTTTGCAGATGTACAGTGTTCTGAAGCTGCCATCATG
GGGACCAGCGGGCCGGCTCTTTCTTCCCTGACTTCAATATGTTCTTGTGT
CAGTATTTCTCTGTCTGATCCCTCTGATCTGCTGGAACTGCCACACTTTA
AATCAGTGATGCTGTTCTCTGGACTTAATCTTTCCTGTAACGAGGAATGG
ATTTCAGCAGACTTTCTGCCTTCAGATAAATTACTCTTGCTGTGCTGTGT
GCTGCTTCCTATCTCCAAGCAATGAGCTTGTTCTTCTGCAGACAATACAT
AGCTTGTGACTGGCGCCTTCTCACCAGCCTGAAGAGATGTCTTTCCATGT
ATTTTGTCCGACTTATCTAAACACTGTGTGTCACCATTAGCCTGCCCTAC
ACTGTTGTCTGTCACAAAGCTGCTCTGGGCTGTCTGCCGCTGTGAACGTG
GGTCAAAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_d22.b1 MSMg01no125_d22.b1 CHROMAT_FILE:
MSMg01no125_d22.b1 PHD_FILE: MSMg01no125_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:13 2005
         (573 letters)



>mm_chr2_146552418_146553390
          Length = 973

 Score = 1083 bits (560), Expect = 0.0
 Identities = 569/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctgtattactctcgcatcgattttctagtaattctgctgggctcattcctccaat 61
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctgtattactcacgtatcgattttctagtaattctgctgggctcattcctccaat 261

                                                                       
Query: 62  aataatgtaatatcatgatgccaaacatatttttgaattatgataatagcttcttagagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aataatgtaatatcatgatgccaaacatatttttgaattatgataatagcttcttagagg 321

                                                                       
Query: 122 gtcattaacctcggcattgatcacaggtctagttgtatgccaacaggatactcagtgatg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtcattaacctcggcattgatcacaggtctagttgtatgccaacaggatactcagtgatg 381

                                                                       
Query: 182 tttgacagtgtaaatgtcacattgctgctgtaacaggctaccccaaacacagtaacttaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttgacagtgtaaatgtcacattgctgctgtaacaggctaccccaaacacagtaacttaa 441

                                                                       
Query: 242 taatagtgaagatctgtttcctgccagttctgcaggtcatgcgttttaagtgggtcctaa 301
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 442 taatagtgaagatctgtttcctgccagttctgcaggtcaggcgttttaagtgggtcctaa 501

                                                                       
Query: 302 aggactgaacaccaagggagctaggctgattctcctagaagcttcagaaggaatttgtcc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggactgaacaccaagggagctaggctgattctcctagaagcttcagaaggaatttgtcc 561

                                                                       
Query: 362 cttgtctcttctggatgttgggttctatggttgcccttccttcagccttggccctgatac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttgtctcttctggatgttgggttctatggttgcccttccttcagccttggccctgatac 621

                                                                       
Query: 422 tctcattattccactctggtatctccttcaggcccatccagacactgcattatattctct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctcattattccactctggtatctccttcaggcccatccagacactgcattatattctct 681

                                                                       
Query: 482 gcattttaagacactgagcttaatcacatctaaatggcctttccaagatgtagtagacaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gcattttaagacactgagcttaatcacatctaaatggcctttccaagatgtagtagacaa 741

                                           
Query: 542 tgttagagtgggaaaaacctctactggttaag 573
           ||||||||||||||||||||||||||||||||
Sbjct: 742 tgttagagtgggaaaaacctctactggttaag 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no125_d22.g1 MSMg01no125_d22.g1 CHROMAT_FILE:
MSMg01no125_d22.g1 PHD_FILE: MSMg01no125_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:13 2005
         (451 letters)



>mm_chr2_146714902_146715752
          Length = 851

 Score =  857 bits (443), Expect = 0.0
 Identities = 449/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttttgaaacatttctataaacacatataagaagtcattaggatgaaactcattaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atcttttgaaacatttctataaacacatataagaagtcattaggatgaaactcattaagt 592

                                                                       
Query: 61  cacttctttgttcaatgagaaatttatagatcacagtgagaaaaggaggcactatgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cacttctttgttcaatgagaaatttatagatcacagtgagaaaaggaggcactatgaaaa 532

                                                                       
Query: 121 tcaataaacaaactcggtctgtcatctcacctgaggaagcttcccaagcagaatgcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tcaataaacaaactcggtctgtcatctcacctgaggaagcttcccaagcagaatgcttct 472

                                                                       
Query: 181 ctccagcccacttctttgcagatgtacagtgttctgaagctgccatcatggggaccagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctccagcccacttctttgcagatgtacagtgttctgaagctgccatcatggggaccagcg 412

                                                                       
Query: 241 ggccggctctttcttccctgacttcaatatgttcttgtgtcagtatttctctgtctgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggccggctctttcttccctgacttcaatatgttcttgtgtcagtatttctctgtctgatc 352

                                                                       
Query: 301 cctctgatctgctggaactgccacactttaaatcagtgatgctgttctctggacttaatc 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cctctgatctgctggaactgtcacactttaaatcagtgatgctgttctctggacttaatc 292

                                                                       
Query: 361 tttcctgtaacgaggaatggatttcagcagactttctgccttcagataaattactcttgc 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tttcctgtaacgaggaatggagttcagcagactttctgccttcagataaattactcttgc 232

                                          
Query: 421 tgtgctgtgtgctgcttcctatctccaagca 451
           |||||||||||||||||||||||||||||||
Sbjct: 231 tgtgctgtgtgctgcttcctatctccaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)