Query= MSMg01no125_f12.b1 MSMg01no125_f12.b1 CHROMAT_FILE:
MSMg01no125_f12.b1 PHD_FILE: MSMg01no125_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:21 2005
(525 letters)
>mm_chr2_33790575_33791499
Length = 925
Score = 839 bits (434), Expect = 0.0
Identities = 500/522 (95%), Gaps = 4/522 (0%)
Strand = Plus / Minus
Query: 5 gaattcatctatattacaacgtttcacatcacaaaaaaaaaaaaaaaaaaagacttaaaa 64
||||||||||||| | |||||||||| |||| | | | | |||||||||||||||||||
Sbjct: 547 gaattcatctataggagaacgtttcacgtcac-acacacacaaaaaaaaaagacttaaaa 489
Query: 65 gaagaagaaaacccgacaatagggtttccaccatgtattgctaattaagaaaatcaaggc 124
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 488 gaagaagaaaacctgacaatagggtttccaccatgtattgctaattgagaaaatcaaggc 429
Query: 125 agggatgtaatatgggtctgtccagtaatgatcagcaagtccccgagcgtgtctgacatg 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 428 agggatgtaatatgggtctgtccagtaatgatcagcaagtccctgagcgtgtctgacatg 369
Query: 185 aggtgtgtgaagtgtagggaaaggcgaggatc-gagaaactgaggttggtttggagaata 243
||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 368 aggtgtgtgaagtgtggggaaaggcgaggatcag-gaaactgaggttggtttggagaata 310
Query: 244 aatcacataaacagaacaaacactatttttttaaattattgttttacgtgtaggaatatt 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 309 aatcacataaacagaacaaacacta-ttttttaaattattgttttacgtgtaggaatatt 251
Query: 304 ttgcttgcaggtatgtttgtgtatcacatgtgtacctggtgcccaagttagccaaggagg 363
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 250 ttgcttgcaggtatgtttgtgtatcacatgtgtacctggtgccaaagttggccaaggagg 191
Query: 364 gcctcaggtcctctggaattgcagttatgggaggttcgagctgccatgtgggtgctagga 423
|||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct: 190 gcctcaggtcctctggaactgcagttatgagaggttcgagctgccatgggggtgctagga 131
Query: 424 actgaatccaggtcctctaggagaacagacggtgctcctaaccactgagccttgtctcca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 actgaatccaggtcctctaggagaacagacggtgctcctaaccactgagccttgtctcca 71
Query: 484 gccccacaagaatatttttattatgaaggaatattgttaact 525
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 70 gccccacaagaatatttttattatgaaagaatattgttaact 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_f12.g1 MSMg01no125_f12.g1 CHROMAT_FILE:
MSMg01no125_f12.g1 PHD_FILE: MSMg01no125_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:21 2005
(535 letters)
>mm_chr2_33730335_33731269
Length = 935
Score = 1011 bits (523), Expect = 0.0
Identities = 532/535 (99%)
Strand = Plus / Plus
Query: 1 aatgagctccaaaaccagagagcgcatctgggcataggcagaggaggtgtgtgcggctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgagctccaaaaccagagagcgcatctgggcataggcagaggaggtgtgtgcggctct 260
Query: 61 aggctccacacctgtaagacagtgtctgaacaagaaagtaaaccttggggggccccagct 120
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aggctccacacctataagacagtgtctgaacaagaaagtaaactttggggggccccagct 320
Query: 121 ttctctcgactgtaaaatgaggtcttgatccacacaggggctgttgtgaaaacagagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctcgactgtaaaatgaggtcttgatccacacaggggctgttgtgaaaacagagaga 380
Query: 181 gaatataaaagaggggcccagaaaagcacacagtaggcactcagaaaacagcaggtggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatataaaagaggggcccagaaaagcacacagtaggcactcagaaaacagcaggtggac 440
Query: 241 tggaaggcttaagggcctgtgggttcttaagggcattctggcttgagctggccagaaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaggcttaagggcctgtgggttcttaagggcattctggcttgagctggccagaaggg 500
Query: 301 aggcaccatgcactagaggtctggccctcttctttgtctagtttaacctccaggtcaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaccatgcactagaggtctggccctcttctttgtctagtttaacctccaggtcaagt 560
Query: 361 ggcacttactcaaagctaagcactgtgatcctaattctcactggtcacttggatgaaaag 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctcttactcaaagctaagcactgtgatcctaattctcactggtcacttggatgaaaag 620
Query: 421 acatgcgtggaattaaccttttgctgctcgctgcctctgcccaggaccagcggaggaggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatgcgtggaattaaccttttgctgctcgctgcctctgcccaggaccagcggaggaggc 680
Query: 481 tgatgaagtacggaaagctgtactgaacgcctggccacctgagtggctgtgcacc 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgatgaagtacggaaagctgtactgaacgcctggccacctgagtggctgtgcacc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
