BAC Information

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BAC

Clone NameMSMg01-125H06
Chromosome2 (Build37)
Map Location 27,051,562 - 27,051,712
singlet/doubletsinglet
Overlap geneSardh
Upstream geneLhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh
Downstream geneVav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1, Fcnb, Olfm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125H06.T7 (MSMg01no125_h06.b1)MSMg01-125H06.TJ (MSMg01no125_h06.g1)
ACCAG334542AG334543
length715709
length of high quality
(start - end)
151 (71 - 221)87 (282 - 368)
definitionCHROMAT_FILE: MSMg01no125_h06.b1 PHD_FILE: MSMg01no125_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:30 2005CHROMAT_FILE: MSMg01no125_h06.g1 PHD_FILE: MSMg01no125_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAAGAGGGCGGAAT
TCCTATCGTTTTCTATGAGGGCTGCCAACACTATCCAAAGTGTAACTCTG
GCCCAAGTGAAACCCAGGCCTCCAGCATCCAAACTCTCCCAGTGACATGT
TCTCTCCTTTCACCTCTGCCATGTGACTGGGTATGAGTCCATGTCTCTGG
GACATTGTGGCCATCATAAGTGGAGGACAGCTCTACTTAGAATTTAATGG
AGCGGGTCACAAGGTCGTTACAAAGGGAAAGACCACCATCTTGTAAGTAG
GGTTCACCCTCCTAAGTCACCTTTTCTGACTTTACTCAGCTCAGAGGAGT
CAGCCCAACTATAGCACCTTTCTCTTCTAAATGCTTGCATTAGAGAAGGT
TAAGTGGTTTCTATGTTTCTGGGGCCCTGCTACATCATCTCTGATCCACT
TCTGGTCCACTCGACCCTTACAGGATCTGAATTTGCATACATATTCCGCT
CTTCCCAACACAAGATGTACATCGCGTAGATCTTTTGTTGCACATGCAGA
TAGAGCTCTTGGGCCTCACTCTTCCCATCTGCACTGGTCTCATGTGCATG
GGAGGTGACCTAAAGACCTTCCAGTCCCATGGGCTCTCCCTGGAAACTGC
ACATAACATCCCTCTTCCTACGGGCCCGGATACTCACTCTTTCCACAGTG
AGGGATTATCATGCG
TCATTGAAGTGTTAGGCCTGGCGGCCGCCTGGTTCACAAAAGGAGGTGAA
CTATAGAAGGTTTCGCGAAATTCCAGAGGACTCAAGTTCAGTTCCTAGTA
CCCGAGTTGGGTGGCTCACAAGAACCTATAATTCCAGCTTCAGGGGATCT
CTGGGCTTTGCATCCTCTCAGACAAATACATAGCCATAACGAGAAATGAA
TATCTGTCTTGATGTACAGATGTCCCGTTGATTACCGATGGGTACTGTTG
TTTGTCTCGTTTCCCAGTCCCGAAGTTGGGTGACTCACAATCACTTGTAA
TTCTAGTTCCAGGGGAGTTTGTATCTCTCTTTTGGACTGTGTAGACACCT
GTACTCACATGTGCATACATCCCACACACTTAATAATACATATACTTGTA
GTTAAAAATACATCTGACAAAAGATCCGTGAATTCTTATCACAACACAAT
GTTAGGTGTGGCGTTGCACACCTTTAATCCCAGTCTCCTACGGGCTGAGG
TAAGATGATCTCTGTTAGTTTACGCCCAGTCTGCTCTATACAGTGCTGCT
CTTTCTCTAACTGAAACCCACAAAACCCCAGATATGGCGGAATTCAGATT
TGCGTTCTACATAATGCCTGTGTTCTATCCTGTTTGTCACTGGCCCTCCT
GATTTTGCTGCACAAGCGACCGAGCCTCTTCTCGAATCTTCCTCCTGACT
ATTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_h06.b1 MSMg01no125_h06.b1 CHROMAT_FILE:
MSMg01no125_h06.b1 PHD_FILE: MSMg01no125_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:30 2005
         (151 letters)



>mm_chr2_27051362_27051912
          Length = 551

 Score =  292 bits (151), Expect = 6e-84
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgccaacactatccaaagtgtaactctggcccaagtgaaacccaggcctccagcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgccaacactatccaaagtgtaactctggcccaagtgaaacccaggcctccagcatcc 260

                                                                       
Query: 61  aaactctcccagtgacatgttctctcctttcacctctgccatgtgactgggtatgagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactctcccagtgacatgttctctcctttcacctctgccatgtgactgggtatgagtcc 320

                                          
Query: 121 atgtctctgggacattgtggccatcataagt 151
           |||||||||||||||||||||||||||||||
Sbjct: 321 atgtctctgggacattgtggccatcataagt 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)