BAC Information

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BAC

Clone NameMSMg01-125H22
Chromosome2 (Build37)
Map Location 128,030,568 - 128,031,027
singlet/doubletsinglet
Overlap geneLOC100043424
Upstream gene1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11
Downstream geneLOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125H22.T7 (MSMg01no125_h22.b1)MSMg01-125H22.TJ (MSMg01no125_h22.g1)
ACCAG334569AG334570
length727715
length of high quality
(start - end)
596 (74 - 669)456 (69 - 524)
definitionCHROMAT_FILE: MSMg01no125_h22.b1 PHD_FILE: MSMg01no125_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:33 2005CHROMAT_FILE: MSMg01no125_h22.g1 PHD_FILE: MSMg01no125_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATGGGCGGAA
TTCTCACCTGAGGTCCCCTGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTATTGGTGGCA
TTGCAGGCTTGTACAACCACTCTGAAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAAGCAAATG
GGTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAG
GATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCATGAAG
AATGAAGACTTGAGCGTGGACACTATG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCACTCTTCTTTGGGTCAAATTGGAACATA
AAGATATAATGAAATCATTCACTTGCATTCAGACTTTACCCATCCCTTAT
AGATCAATGGGGACAAGTTTGGAAGACATATCACAGCATCAGACAAATAG
AAGAATGGAAATGCATTACAGATCTCACGCAGAGATTGGTCAAATGATTG
CAGCAAATGAGTCGAAATATGTCACAGAACTTGTACATAGACTATTCAAA
ATGATTGCCAAAGAACTGATATAAATCACAAAATATTTGCATAGATTATT
CAAAATGATCTCTGTACAGTTTCATCTAAAAAAAAAAAAGCTTTTACATC
AGTATTATCAGCAGCAAAGGGCAATGTACAATTTCAGCCTAAATTGACTG
TCCTACTTTCTCCCCAGGGCAGCATTCTCAGAAGGATCCATCTATGATCC
AGGCAGAAAGAGCAGATGTATCTGAATGGCCCACTATCTTCTTCAAACTG
ATTTCCACAAAGACCTCTATCCAATCCTTATAATCTGTTTCTCTTTGCTA
CAGGGTCATTCTGTACCAACAGCAATGTCTGGACCCTTCTCCTGGGAAAG
GCACTTTGAACCTTCCCCATGGTTCTCCACATCTGTTCTCCACCCATTCT
CCTTCCACGGTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_h22.g1 MSMg01no125_h22.g1 CHROMAT_FILE:
MSMg01no125_h22.g1 PHD_FILE: MSMg01no125_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:33 2005
         (456 letters)



>mm_chr2_128030368_128031227
          Length = 860

 Score =  793 bits (410), Expect = 0.0
 Identities = 446/460 (96%), Gaps = 4/460 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcactcttctttgggtcaaattggaacataaagatataatgaaatcattcacttgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 actcactcttctttgggtcaaattggaacataaagatataatgaaatcattcacttgcat 601

                                                                       
Query: 61  tcagactttacccatcccttatagatcaatggggacaagtttggaagacatatcacagca 120
           ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 600 tcagactttacacatcccatatagatcaatggggacaagtttggaagacatatcgcagca 541

                                                                       
Query: 121 tcagacaaatagaagaatggaaatgcattacagatctcacgcagagattggtcaaatgat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcagacaaatagaagaacggaaatgcattacagatctcacgcagagattggtcaaatgat 481

                                                                       
Query: 181 tgcagcaaatgagtcgaaatatgtcacagaacttgtacatagactattcaaaatgattgc 240
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 480 tgcagcaaatgagtcgaaatatatcacagaacttgtacatagactagtcaaaatgattgc 421

                                                                       
Query: 241 caaagaactgatataaatcacaaaatatttgcatagattattcaaaatgatctctgtaca 300
           ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 420 caaagaactgaaataaatcacaaaatacatgcatagattattcaaaatgatctctgtaca 361

                                                                       
Query: 301 gtttcatct----aaaaaaaaaaaagcttttacatcagtattatcagcagcaaagggcaa 356
           |||||||||    ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 360 gtttcatctcaaaaaaaaaaaaaaagcttttacatcagtattatcagcagtaaagggcaa 301

                                                                       
Query: 357 tgtacaatttcagcctaaattgactgtcctactttctccccagggcagcattctcagaag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtacaatttcagcctaaattgactgtcctactttctccccagggcagcattctcagaag 241

                                                   
Query: 417 gatccatctatgatccaggcagaaagagcagatgtatctg 456
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gatccatctatgatccaggcagaaagagcagatgtatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 860
Length adjustment: 10
Effective length of query: 446
Effective length of database: 850
Effective search space:   379100
Effective search space used:   379100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)