BAC Information

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BAC

Clone NameMSMg01-125K11
Chromosome2 (Build37)
Map Location 153,943,958 - 153,944,134
singlet/doubletsinglet
Overlap genenone
Upstream geneHck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652
Downstream gene1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125K11.T7 (MSMg01no125_k11.b1)MSMg01-125K11.TJ (MSMg01no125_k11.g1)
ACCAG334685AG334686
length713743
length of high quality
(start - end)
238 (54 - 291)177 (151 - 327)
definitionCHROMAT_FILE: MSMg01no125_k11.b1 PHD_FILE: MSMg01no125_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:46 2005CHROMAT_FILE: MSMg01no125_k11.g1 PHD_FILE: MSMg01no125_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATACCAGCA
AAAAAAAGAAATTACACCACACACACACATACACGACAGACACACACACA
AAATACACGCACCACTGAACATCAAAATAACAAGAAATAACAATCACTGG
TCATTAATTTCTCTCAACATCGATGGTCTCAATTCCCCAATAAAAAGATA
TAAGCCAAGAGGATGGATCTGAAAATAGGATACTTTCATTCTGCTGCATG
CAAGAAACATACCTCATGAATAAAGATAACCATTACCTCAGAGTAATGGT
CTGGATATTAGTTTTCCCAGCAAAGAGAGCATAGGATCAAGCTGTTAGTG
GGTTCCCCTGCTGCCCCCCAAAATATACTTTTGTTTTGGTTTGTTTCTGC
TTGCCCCACAAGTACAAAAATATTTGGGGGTGGGGCCCTTTTTTACCACT
CACCTCCTTGTCTATACCACATATGTTTCTGTTGTTGCCCTTTAACACCC
TCATTCCACTTACTCTGACAACCAGTATACTGCTACCCCTCTTTCTATAA
TTACGCTTAACTCTTAGACTCTCCCAGTACCCCGTCCGTCTCCCCCCGCG
CTTATGTTTCATCGCCCCTGATTATCCCCTTACCCTCTTCTCCGTTCCCC
CACCCTTTCTTCCCACTATATATCCAACCCCATATCAAACCCCATACACC
CCGCCATCGCGGC
AGCCCCCCTCAATCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCACACCCTGC
CTTCACTGACTCCAAAGTGGTACTCAGTTTTCACACGAAATCTCAGTTTC
AGACTTCAAGCTGCTTTGACTTCTCTATTAGCCCCCTCTATCCATCCACC
AGGAGATCTTGTCAACACTTTCAGTCCTAGAACTTCAGGCCACCTATCAC
TTTACCTTGAGTCATTTCAAAGATTCTTAACTGGTCTTCAGCTTCTGCCA
TGCCACTTACCAATCCTATCTGCACAATTGTCCTTGCAATCATCTGACTC
CATCAGACTATGCCACACCTTTTTTTTTTTTCCCCCCCCCCCACCCAGCT
AATAAGAAATTTTGAATGCCCTCCCCTTCCAGGACTAAAAAAAAAAAATA
AACCGCTGGCGGAGGTTCCCATCCCTACCCATCTGTCCTCGCGCCTCTGC
TGAACCCTTGTGTAATATCCTGTATCCGCCTTCTGCGCTGTAGACACCAT
CCGCCTGTCACGTGACTGTCGCCGCCCCCTAGTTGCACTTAGCCTGCTTC
CCTCCAATCACTCCTCGGCCTCAATTTTTTCACACCAGTGCCCCCCCTTG
CACCTGGACGTTCACCCCCCCCCAATAAGCCCGGGTCAGCCTCCGGTTCT
TTAGGGCCCAACCCATGATCTCCCACCAGCCACCAGCCGAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_k11.g1 MSMg01no125_k11.g1 CHROMAT_FILE:
MSMg01no125_k11.g1 PHD_FILE: MSMg01no125_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:46 2005
         (177 letters)



>mm_chr2_153943758_153944334
          Length = 577

 Score =  311 bits (161), Expect = 1e-89
 Identities = 173/177 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttcaagctgctttgacttctctattagccccctctatccatccaccaggagatctt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 377 agactccaagctgctttgacttctctattagccccctctatccatccactaggagatctt 318

                                                                       
Query: 61  gtcaacactttcagtcctagaacttcaggccacctatcactttaccttgagtcatttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtcaacactttcagtcctagaacttcaggccacctatcactttaccttgagtcatttcaa 258

                                                                    
Query: 121 agattcttaactggtcttcagcttctgccatgccacttaccaatcctatctgcacaa 177
           |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 257 agattcctaactggtcttcagcttctgccatgccacttaccaatcctatccgcacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)