Query= MSMg01no125_l05.b1 MSMg01no125_l05.b1 CHROMAT_FILE:
MSMg01no125_l05.b1 PHD_FILE: MSMg01no125_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:49 2005
(388 letters)
>mm_chr2_160861162_160861950
Length = 789
Score = 702 bits (363), Expect = 0.0
Identities = 381/387 (98%), Gaps = 3/387 (0%)
Strand = Plus / Minus
Query: 3 gaattcccaacttc-tttcacttgatttttt-aatatattctatgaatgttttatgcctt 60
|||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 507 gaattcccaacttcttttaacttgattttttaaatatattctatgaatgttttatgcctt 448
Query: 61 ctaagagtaaagtcctgtgccttcctcatccatgtattagtatgtccttagttttgacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctaagagtaaagtcctgtgccttcctcatccatgtattagtatgtccttagttttgacct 388
Query: 121 tactaaaatactcttaagaatcttgttagaatccatattacctgttctttttgtaggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tactaaaatactcttaagaatcttgttagaatccatattacctgttctttttgtaggtaa 328
Query: 181 aaataaaaggatatttgaagcagttgatactagaaaaagaaaaaaaaaatagcatgtatg 240
|||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct: 327 aaataaaaggatatttgaagaagttgatactagaaaaagaaaaaagaa-tagcatgtatg 269
Query: 241 tgcgtcagttcgtcagtgtgtgcttcctgctagtctgtactaaatagggcttgaacagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgcgtcagttcgtcagtgtgtgcttcctgctagtctgtactaaatagggcttgaacagat 209
Query: 301 catgactttagaggtttagtccatcattactatggcaatgggcatggtgctggggtagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 catgactttagaggtttagtccatcattactatggcaatgggcatggtgctggggtagta 149
Query: 361 gctgagagctacatcttgctctgcagg 387
|||||||||||||||||||||||||||
Sbjct: 148 gctgagagctacatcttgctctgcagg 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 789
Length adjustment: 9
Effective length of query: 379
Effective length of database: 780
Effective search space: 295620
Effective search space used: 295620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_l05.g1 MSMg01no125_l05.g1 CHROMAT_FILE:
MSMg01no125_l05.g1 PHD_FILE: MSMg01no125_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:49 2005
(421 letters)
>mm_chr2_160750714_160751534
Length = 821
Score = 783 bits (405), Expect = 0.0
Identities = 417/421 (99%)
Strand = Plus / Plus
Query: 1 tctcttcatccccaaggcccatgttctgctaacacactaatcgggcctccctatgcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttcatccccaaggcccatgttctgctaacacactaatcgggcctccctatgcttca 260
Query: 61 ggacaagtgctctgctttcgggaggggtgcagtagggctaccaggaccacccaaggctcc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ggacaagtgctctgctttcgggagggatgcagtagggctaccaggaccacccaaggctcc 320
Query: 121 tggctctgccgctcctctggtgggtcctgtgccaagttttgcaactgtggagatctgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctctgccgctcctctggtgggtcctgtgccaagttttgcaactgtggagatctgatt 380
Query: 181 cgcacccaaagtcctctgagctcaatgtccctactgtctggcgcagagggagggtaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcacccaaagtcctctgagctcaatgtccctactgtctggcgcagagggagggtaaatc 440
Query: 241 ccgagccagcctgctcatcacaacgctaccccacctcctaggcctggcagctggctgacc 300
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ccgagccagcctgctcagcacaacgctgccccacctcctaggcctggcagctggctgacc 500
Query: 301 ctggaactcggccacaggagcaggtttggagctgggaaagaaagacaatgatacttccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggaactcggccacaggagcaggtttggagctgggaaagaaagacaatgatacttccaa 560
Query: 361 gttgccattgttgagatgtttaactagagagagctttttgagttcacaagcgttggtacg 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gttgccattgttgagatgtttaactagagagagctttttgagttcacaagtgttggtacg 620
Query: 421 a 421
|
Sbjct: 621 a 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
