Query= MSMg01no125_l17.b1 MSMg01no125_l17.b1 CHROMAT_FILE:
MSMg01no125_l17.b1 PHD_FILE: MSMg01no125_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:52 2005
(471 letters)
>mm_chr2_102119257_102120126
Length = 870
Score = 455 bits (235), Expect = e-132
Identities = 353/455 (77%), Gaps = 99/455 (21%)
Strand = Plus / Minus
Query: 5 cgcctcaccttccagctgccagaaaacccagttattcaacatat-cccctcactgcctga 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 812 cgcctcaccttccagctgccagaaaacccagttattcaacatatccccctcactgcctga 753
Query: 64 gagcacagtcccctggagtccaagcacatggatgggaaatgagtttgatatgcacctgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gagcacagtcccctggagtccaagcacatggatgggaaatgagtttgatatgcacctgtg 693
Query: 124 gccaagttctgaaccaggttgtgaacctaagacctggctgaggtcaagagagcaatgttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gccaagttctgaaccaggttgtgaacctaagacctggctgaggtcaagagagcaat---- 637
Query: 184 tggtatagcattggaaatgtaaatgagctaaatacctaataaaaaattaaaaaaaaaact 243
Sbjct: 637 ------------------------------------------------------------ 637
Query: 244 aacagctaatatattaaaaagagagagcaatgtttgtgcattcgtgagtttataggctgt 303
|| ||||||||| |||||||||||||||||
Sbjct: 636 --------------------------gc-----ttgtgcatttgtgagtttataggctgt 608
Query: 304 aggattgtattcaggaatgttctagacagatatcatctttgtaagccatctggagaccaa 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 607 aggattgtattcaggaatgttctagacagatatcatctttgtaagccatctggaaaccaa 548
Query: 364 gtgactggccagtgctatcatggctataaaggtctagaagtatttatgtgggactgcaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtgactggccagtgctatcatggctataaaggtctagaagtatttatgtgggactgcaga 488
Query: 424 aattgggtttttgggttttttttgtttgcttgttt 458
|||||||||||||| ||||||||| || ||||||
Sbjct: 487 aattgggtttttgg-ttttttttggtt--ttgttt 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_l17.g1 MSMg01no125_l17.g1 CHROMAT_FILE:
MSMg01no125_l17.g1 PHD_FILE: MSMg01no125_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:52 2005
(451 letters)
>mm_chr2_102046837_102047689
Length = 853
Score = 779 bits (403), Expect = 0.0
Identities = 440/453 (97%), Gaps = 3/453 (0%)
Strand = Plus / Plus
Query: 1 aatacgtgcacaggcgagcaatcaggaacacggacagcagcttcctct--cagaggcaaa 58
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 201 aatacgtgcacaggcgagcaatcaggagcacggacagcagcttcctctcacagaggcaaa 260
Query: 59 gtccttcagaggagagtcgggcaggggattcctaaagttcattttaatgtgatggagaca 118
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gtccttcagaggagagtcaggcaggggattcctaaagttcatttaaatgtgatggagaca 320
Query: 119 tctttcccccagggcattgccctacagggtttcttccctggtgtatggcctcacttctga 178
||| |||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tctgtcccccagggtactgctctacaggatttcttccctggtgtatggcctcacttctga 380
Query: 179 gacaatggatctcattgtcgtgattaggtgacagaagagggcacaggtgaagggatttta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaatggatctcattgtcgtgattaggtgacagaagagggcacaggtgaagggatttta 440
Query: 239 gcagctgtatattaaatctttgaggcagggtaatcaaaaaaggagcttatctcaaatagg 298
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagctgta-attaaatctttgagacagggtaatcaaaaaaggagcttatctcaaatagg 499
Query: 299 tctgagctaatcaagcaaacccttaaagagagagatttggaatagaaaagctgccactgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgagctaatcaagcaaacccttaaagagagagatttggaatagaaaagctgccactgg 559
Query: 359 cctccgagaaacaggttggtaaaagtggagggggaggggaaactgaagagatggctcagc 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctcggagaaacaggttggtaaaagtggagggggaggggaaactgaagagatggctcagc 619
Query: 419 agctgctcctgcagaggaccagagtgcttccag 451
|||||||||||||||||||||||||||||||||
Sbjct: 620 agctgctcctgcagaggaccagagtgcttccag 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 853
Length adjustment: 10
Effective length of query: 441
Effective length of database: 843
Effective search space: 371763
Effective search space used: 371763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
