BAC Information

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BAC

Clone NameMSMg01-126C19
Chromosome2 (Build37)
Map Location 172,824,166 - 172,824,377
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11
Downstream geneRae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126C19.T7 (MSMg01no126_c19.b1)MSMg01-126C19.TJ (MSMg01no126_c19.g1)
ACCAG335063AG335064
length725709
length of high quality
(start - end)
37 (146 - 182)209 (67 - 275)
definitionCHROMAT_FILE: MSMg01no126_c19.b1 PHD_FILE: MSMg01no126_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:27 2005CHROMAT_FILE: MSMg01no126_c19.g1 PHD_FILE: MSMg01no126_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAAAGGGGCGGAATTC
CTGCTTCTACCCTGGAATAAGATGTGTGTCTCCCAACGCTCAGGAGGCAG
AGGCAGGCAGAGCCTCTGTGAGTTAGGGCCATTTGGTTCTACATAAGCCA
GTTTCAGGACAGCCAGCGCTATACAAAGAAACTGCGTCTCAGAAAAGCAA
AACAAAGACTAACCAAAAAGAGTTTGTGTCTTCCTACCTCAAAGATACAC
ACTATAAGTGGATTCACCCACTTCAAACCAAGCAAAAACATCTCTCCCGG
TTGTGCCTTCCCTTTCTGGATTGTTTTCTATTCCCAGTGTATCATGGCCG
ACTTCCTTTACCAGTCATCCCAGTCGCCTTCTTCTATGATTCCTTCCTTG
AACTTACTCTACGTCCCACCTCATCGTATAGTCTCTTCCTTTGTACCCCT
GATTGATCAGACCTTGAACTCCTTAAAGTCCCATTCGTTATCTGCCCTCT
CCCCGTTGCCCTCTGTCCCATAACCCTTTCAATAACCAACTCTCTCATAG
CGCCCTTCCACATGTTTCTCTTCGACTGCCTTTGTCTTTCTCCATTCCCG
CCACTTTGATATTTTAGCTCCCACATACCTAACCCCATGTCTTTTTCCCC
CCATATTCTCCGTTTCCCTCTTTTCCCGCCCTCTTTCCACCTCCTTCCAC
CTACCTCCCGATTCCGCTTCTTTTT
ATATGTGAGGCCTGGCGGCGCCTGTTTCCAAAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTAGACAGGGATCACAAGGCTGGGGAGACAGAG
GAATCAGTCTGGGCGCGTCCTGGGAAGGTCATAGTAACAATGCCCTGTGA
AACTAAACTAAAGGAGCCCTCTACTCTGGACCCAACTCTTCCCCTGCGCC
CCAACAGGAATAAACACGACGACAAACCAAACACTATGTACGCTAACTAA
ACCTTGTTATTTGACTTCTCAGGGGGCGGGAGTAAGTAGATGATCACCAA
GTGTCCTAGACAGGCCTGTTTCCTCTGTGTTGTATTGAGGTCCCTTAAGA
CAGGTAACCAGCGGCCAGTTTTTATTCCATTGTTCTGTAACCCTGTTCCT
GCCTTACACCCCCAAAAATTGTTTTGGAGACAGAGCATTACTGTGTAGTT
CTGATTGTTCTACAACTCATAGAGACGCCCCTCCCCACCCCGTCTCTACT
TCCTGCGTGCAGGGATTGTAAGGTCTGCCAAGTTGCCCAACTAGGATATT
AATTTTGCACGCACCACACCAATTCTGCTCTTCCCCCCTGATCCTTGTCT
TTTCCCTTTCTCTCATACCGTTCTCTCTGATTGTTTCCTCGGAACCCCCA
CTTCTTCATTTCACCAAATCATGCTGGCCCCTTAACCGACACCTTTAATC
CTCTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_c19.g1 MSMg01no126_c19.g1 CHROMAT_FILE:
MSMg01no126_c19.g1 PHD_FILE: MSMg01no126_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:27 2005
         (209 letters)



>mm_chr2_172823966_172824577
          Length = 612

 Score =  364 bits (188), Expect = e-105
 Identities = 205/212 (96%), Gaps = 3/212 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagacagggatcacaaggctggggagacagaggaatcagtctgggcgcgtcctgggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttagacagggatcacaaggctggggagacagaggaatcagtctgggcgggtcctgggaa 260

                                                                       
Query: 61  ggtcatagtaacaatgccctgtgaaactaaactaaaggagccctctactctggacccaac 120
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 261 ggtcatagtaacaatgccctgtgaaaccaacctaaaggagccctctactctggacccaac 320

                                                                       
Query: 121 tcttcccctgcgccccaacaggaataaacacgacgac---aaaccaaacactatgtacgc 177
           |||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 321 tcttcccctgagccccaacaggaataaacacgacgacgacaaaccaaacactatgtacgc 380

                                           
Query: 178 taactaaaccttgttatttgacttctcagggg 209
           ||||||||||||||||||||||||||||||||
Sbjct: 381 taactaaaccttgttatttgacttctcagggg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 612
Length adjustment: 9
Effective length of query: 200
Effective length of database: 603
Effective search space:   120600
Effective search space used:   120600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)