Query= MSMg01no126_c21.b1 MSMg01no126_c21.b1 CHROMAT_FILE:
MSMg01no126_c21.b1 PHD_FILE: MSMg01no126_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:27 2005
(544 letters)
>mm_chr2_75736307_75737250
Length = 944
Score = 899 bits (465), Expect = 0.0
Identities = 517/545 (94%), Gaps = 21/545 (3%)
Strand = Plus / Plus
Query: 4 gaattctgtttaagcct---ccttctagctggagatagtcttaaaatgtttctgtagaac 60
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 204 gaattctgtttaagcctaaa--ttctagctggagatagtcttaaactgtttctgtagaat 261
Query: 61 agctgtatatcattatgtactatgtctgtcaagtcaaacaaaacttaggaaaaaaaatca 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 262 agctgtatatcattatgtactatgtctgtcaagtcaaacaaaac--aggaaaataaatca 319
Query: 121 agccaaacaaaattcaagggaaaaaaaagaatttagttataaaatgtcaattgaggctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agccaaacaaaattcaagggaaaaaaaagaatttagttataaaatgtcaattgaggctat 379
Query: 181 agaagtggtttttcttttaattaactaaaacaaaataaactttaacttttgtccgataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaagtggtttttcttttaattaactaaaacaaaataaactttaacttttgtccgataat 439
Query: 241 agaaaaagtataaataaaatctattttctgaaggtagtagaaagcagtattcattgacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaaaagtataaataaaatctattttctgaaggtagtagaaagcagtattcattgacta 499
Query: 301 tcttt-aaaaagttttacaattattttgttttatttttttatgtgtatgaatgttttgcc 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttttaaaaagttttacaattattttgttttatttttttatgtgtatgaatgttttgcc 559
Query: 360 tacatgtatgtacatgtaccacatgcataccttgtatgcgtggagcagaagagaacatca 419
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 560 tacatgtatgtacatgtaccacatgcataccttgtgtgcgcggagcagaagagaacatca 619
Query: 420 gaagtagaagttagaggcggttatagaacagcaggcaactaaatgctggtgctctgcaag 479
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 gaagtagaagttagaggaggttatagaacagcaggcaactaaatcctggtgctctgca-- 677
Query: 480 agcaacaagtactcttgaccactaagccagctctccaaatcctcattcgttgtctttaaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 -----------ctcttgaccactaagccagctctccaaatcctcattcgttgtctttaaa 726
Query: 540 actaa 544
|||||
Sbjct: 727 actaa 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_c21.g1 MSMg01no126_c21.g1 CHROMAT_FILE:
MSMg01no126_c21.g1 PHD_FILE: MSMg01no126_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:27 2005
(501 letters)
>mm_chr2_75835657_75836557
Length = 901
Score = 849 bits (439), Expect = 0.0
Identities = 487/503 (96%), Gaps = 4/503 (0%)
Strand = Plus / Minus
Query: 1 cagacagggattgatacacagataacaaggcttg-actcctgggagagtggccctgtgaa 59
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 701 cagacagggattgatacacagataacaaggc-tgaactcctgggagagtggccctgtgaa 643
Query: 60 cagacgagggggcctgaaggacagggatgagttcagctcagcctgattaagtcactgcgt 119
||||||||| || ||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct: 642 cagacgaggtggtctgaaggacagggatgagttcagctcaacctggtcaagtcactgcgt 583
Query: 120 ctccagccatgacagcacgtggagaggagaagcttagacgtgactcacgggc-agctgcg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 582 ctccagccatgacagcacgtggagaggagaagcttagacgtgactcacgggcaag-tgcg 524
Query: 179 tcgctgcgatgtggcatgtccagtctggggctgttatctgttaactcgtcggtaaccttt 238
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 523 tcgctgcgatgtggcatgtccagtctggggctgttatctgttaactcatcggtaaccttt 464
Query: 239 gcctttcagaacctagaagttcagcaggtcactaatttgtaagttaaggcccacttatca 298
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 463 gcctttcagaacctagaagttcagcaggtcactaatttgtaagttaagacccgcttatca 404
Query: 299 cacttgactactccattctgaagtcacatgccttaaatagaaacctcctacgtttctcaa 358
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cacttgactgctccattctgaagtcacatgccttaaatagaaacctcctacgtttctcaa 344
Query: 359 agacactcttgccctcgtgactcatcagtcatgtgagtctgagagactctgaaggcccgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agacactcttgccctcgtgactcatcagtcatgtgagtctgagagactctgaaggcccgc 284
Query: 419 catggctgacatgccccttgccccttctgctggaggtctgggtggctgtgtcagcagctc 478
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cacggctgacgtgccccttgccccttctgctggaggtctgggtggctgtgtcagcagctc 224
Query: 479 gtcgcgtctgtgcttttccattt 501
|||| ||||||||||||||||||
Sbjct: 223 gtcgtgtctgtgcttttccattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
