AATCATAATTTGCGGCGCTAAACGACTCCTATATTCAGAAGATCCGCGGA
ATTCTTAAACTATTCCCTCTGAGGCGGAACTAGTGAGTATATATTTGTCA
CAGCTGTCGTTACTTCAGTGTAGAAGTTATACTTTATATTGTCTCCATAC
AAATATTTGTGTGTGTACACATGCACACCCACCCAGAGAAATGAAGGTTT
CAGGTCGGACACACATGTAAATGCTTACTGAACAATGCATTTGACCACCT
AAAAAATAAAATAAGCATAGGCTAGTGTCTGCCTTTGGCTTGAACACCTC
AGCCAGCGATCACTCACATAGTTGACCTTGGTTTTTATTGAGGGCACTGG
GAGCCACATTATCAAGCACATTGAGCCAACCCCGATTCGCCTTAGCATCA
TTTTTCTTTCTGCACAGATGAAAAGGTCCTCAGACAGATTGTTTTCTTTT
TGTTCCGCACTGGGTGGTAGTGGTGGGGGAAAACATGATTTTTGCATGAC
TATGGGTCTGCTCTATAAATACGCAAATTCGGGCCTTTGTTTTAAATGTA
ATCAGCAAGATTGCATTTGCATTGCTTGTAAGTGAATCACATAAGTGAAA
TTACTTTGCCTGCATCTCATTTGGTATCATAAAATGTTATGGGATACAGG
CTGTTTTTCTCCAGCTAAAGTGGCTCGAGCTAGTAT

TTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCTCCCGTAATTCCCCCATCTTGTCACCTGTGTCA
CATACCTCTATGTTCCAAGTGTTTTATTTAGTTAGCAACAACTGCAAAAA
GATGTATTAAAAGCGGCGGGGGGGGGGGGCTTTTCTTTTTTCCTTTTCTT
TTTTCCCTTCTTTCTCCTCCTTCTTTTTTCCTTTTTCTTTTTTTTTTCTC
CTTTTTCTCTTTCCTCTTCTCCTCCTTTTTCCTTTCTTTCCCTTTTCTTT
CCCTTTTTCTTTTCTTTCTCCTTCTCCTTTCCCTTCTCTCTTTTTTTTTT
TCCCCCTTCCTCTCTTCTCTTTTCTCTTCCCTTTTCCCCCCCCTCCCCTC
CCCTCTCTCCCTTTTTCTCCCTTTCTCTTCTCTTCCTTTTCTCCTTTCTC
CCCCCTCTTTTTTTCCTTCTTTCCCTTCTTTCTCTTCTTTCCTTCTCCCT
CCTCTTCTTCCCTCTCCTTCTCTTCTCTTCCCCCTCTTTTCTTTTTTCTC
TTTTCTTACCCCTTTTCCCTTTTCTTCCCTTCTCTTCCCTTTCTCTCCCC
TTCTCTCTTCTTCTCTCCTCTCCTTTTCTTCCTTTCCTCTCCCTTTCCCC
CTTCTCTTCTTTCTTTCCCTCTCTCCTCTTCCCTCTCCCTCCCCTCTCTT
CCCTTTCTCCTCCTCGCTCTTTTTTCTTTCCTTCCTTCCCCCTTTCCTCT
TCCCTTTTCTTCTCTTCTTTCCTTCTCCCCCTTTTTTC

Query= MSMg01no126_d23.b1 MSMg01no126_d23.b1 CHROMAT_FILE:
MSMg01no126_d23.b1 PHD_FILE: MSMg01no126_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:33 2005
         (593 letters)



>mm_chr2_106559981_106560974
          Length = 994

 Score = 1118 bits (578), Expect = 0.0
 Identities = 587/590 (99%), Gaps = 1/590 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaaactattccctctgaggcgg-aactagtgagtatatatttgtcacagctgt 63
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaaactattccctctgaggcggcaactagtgagtatatatttgtcacagctgt 264

                                                                       
Query: 64  cgttacttcagtgtagaagttatactttatattgtctccatacaaatatttgtgtgtgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgttacttcagtgtagaagttatactttatattgtctccatacaaatatttgtgtgtgta 324

                                                                       
Query: 124 cacatgcacacccacccagagaaatgaaggtttcaggtcggacacacatgtaaatgctta 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 cacatgcacacccacccagagaaatgaaggtttcaggtcagacacacatgtaaatgctta 384

                                                                       
Query: 184 ctgaacaatgcatttgaccacctaaaaaataaaataagcataggctagtgtctgcctttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaacaatgcatttgaccacctaaaaaataaaataagcataggctagtgtctgcctttg 444

                                                                       
Query: 244 gcttgaacacctcagccagcgatcactcacatagttgaccttggtttttattgagggcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttgaacacctcagccagcgatcactcacatagttgaccttggtttttattgagggcac 504

                                                                       
Query: 304 tgggagccacattatcaagcacattgagccaaccccgattcgccttagcatcatttttct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggagccacattatcaagcacattgagccaaccccgattcgccttagcatcatttttct 564

                                                                       
Query: 364 ttctgcacagatgaaaaggtcctcagacagattgttttctttttgttccgcactgggtgg 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctgcacaaatgaaaaggtcctcagacagattgttttctttttgttccgcactgggtgg 624

                                                                       
Query: 424 tagtggtgggggaaaacatgatttttgcatgactatgggtctgctctataaatacgcaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagtggtgggggaaaacatgatttttgcatgactatgggtctgctctataaatacgcaaa 684

                                                                       
Query: 484 ttcgggcctttgttttaaatgtaatcagcaagattgcatttgcattgcttgtaagtgaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcgggcctttgttttaaatgtaatcagcaagattgcatttgcattgcttgtaagtgaat 744

                                                             
Query: 544 cacataagtgaaattactttgcctgcatctcatttggtatcataaaatgt 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacataagtgaaattactttgcctgcatctcatttggtatcataaaatgt 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space:   573672
Effective search space used:   573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)