BAC Information

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BAC

Clone NameMSMg01-126G22
Chromosome2 (Build37)
Map Location 76,418,631 - 76,419,037
singlet/doubletsinglet
Overlap geneOsbpl6
Upstream geneLOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
Downstream genePrkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G22.T7 (MSMg01no126_g22.b1)MSMg01-126G22.TJ (MSMg01no126_g22.g1)
ACCAG335248AG335249
length712698
length of high quality
(start - end)
413 (41 - 453)---
definitionCHROMAT_FILE: MSMg01no126_g22.b1 PHD_FILE: MSMg01no126_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:49 2005CHROMAT_FILE: MSMg01no126_g22.g1 PHD_FILE: MSMg01no126_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTAAGTCTTTCGCTAACTGAACCGATGGAGGCATTCTTTCAGGCCATTC
ACCCACAATGCTTCTGAGAAGTGCTCACATCAAAATTTACCTGACTGGGG
ATGTGGTAGCCACCAGTCCACTTTTTAACAAGTCCTCAGAACCCTTTCAG
AAAATCGTCTACTAAAAGCTATATCATTTTTTTTAAGATGGCCTACTTCT
TTCCAGAATGATCTGGTGTCTGCTTTAAAACTTGTGTCTGCAGGGACGTG
CCTAATCACTTTTAGAATATAGTTCCTGATTTACTTTTGAACCCCGAAGC
TTAGAACCACAATATTTGGCTCCAGCACTTTTAGCTCACAGGGAAGACAC
AGACCTTGGTAACACCCCAGGGTCTTGATCTGTGTGTAGGACCATATGAG
AGGACTACATCAAACAGCCCAGCCCCTGTTGCTGCACACAAACATGGGAC
GTGTGTACCTCTGCCTCATGTCTACGGTCACTGCAGAGTTCTACAGGAAA
GATAATGTATCACTTATGACACAGTCGCTTAGGAGAAACCAAAACCTGAA
GTGTGCTTACGCATGGTTCTTTCCTTAATCAATGCGCACAACAAACGATA
TTGTCATAACCACTAATTTCCGCGAGGCCTTGTCTCCTTGGTTGCACATA
CGCGAGACGAAT
CCGATGTAGTGGGAGGCCCGGNGGCGCCCGGTTTCGNGCACCGCCNGAAC
NANAGAAGGATTTGCGGCACGCAGAGNAAAGAGGAACGNGAGCACCACGG
CCAAAAACAGAACGACAAGACACCCAGGACGGCCGAAANCCNACCCGGAA
CCGAAACCGGGCCANCGACNCCCGNAGCCCAAGAGGCCCCGCGAGAAGCC
GCCANCCNCNANAAACCAGCGGCGAGNACCAAGACCGCCAAAGGAGAANA
CCGACTTTTGACGGAGGAAAAGAAAGAGGAGAGAAAACCCCGCACGCCNN
ACGAAGCCCCAGAGCCCCGCATTTTTTTTTTGCCACGGCAGAAGAAGACC
AGCGCANCAAGCAGCCCGCCCCCACGNCAGACAAGAAGNGGNANAAAAAG
AACCGGGANCAANACGAAACGCCCGGGAAACTTGACAGAGTTGTCCAGAA
AAGGCCCAAGCGCATCCGCCTTTCAAGACGGTAGCAGTTCTATGAGATGC
CTCTTCCTCGCATTACTGACCAATACCGACCTAAATGGCGGATCCCCAAA
CTGACCCAAGATGATCTGCAAATGGCGAGGTCGGCCCGACGACGTACCCC
TTCCCCGGATTATGACCTTTACTAATATTGAAGGAGGAGACCCCCTCTGG
GGGACATGCCAGATTATTATTTGTTCTCCCCATTGATGACTCCCGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g22.b1 MSMg01no126_g22.b1 CHROMAT_FILE:
MSMg01no126_g22.b1 PHD_FILE: MSMg01no126_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:49 2005
         (413 letters)



>mm_chr2_76418427_76419237
          Length = 811

 Score =  760 bits (393), Expect = 0.0
 Identities = 405/409 (99%), Gaps = 2/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaagtctttcgctaactgaaccgatggaggcattctttcaggccattcaccc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaagtcttt-gctaactgaaccgatggaggcattctttcaggccattcaccc 263

                                                                       
Query: 65  acaatgcttctgagaagtgctcacatcaaaatttacctgactggggatgtggtagccacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaatgcttctgagaagtgctcacatcaaaatttacctgactggggatgtggtagccacc 323

                                                                       
Query: 125 agtccactttttaacaagtcctcagaaccctttcagaaaatcgtctactaaaagctatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtccactttttaacaagtcctcagaaccctttcagaaaatcgtctactaaaagctatat 383

                                                                       
Query: 185 cattttttttaagatggcctacttctttccagaatgatctggtgtctgctttaaaacttg 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cattttttt-aagatggcctacttctttccagaatgatctggtgtctgctttaaaacttg 442

                                                                       
Query: 245 tgtctgcagggacgtgcctaatcacttttagaatatagttcctgatttacttttgaaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtctgcagggacgtgcctaatcacttttagaatatagttcctgatttacttttgaaccc 502

                                                                       
Query: 305 cgaagcttagaaccacaatatttggctccagcacttttagctcacagggaagacacagac 364
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cgaagtttagaaccaaaatatttggctccagcacttttagctcacagggaagacacagac 562

                                                            
Query: 365 cttggtaacaccccagggtcttgatctgtgtgtaggaccatatgagagg 413
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttggtaacaccccagggtcttgatctgtgtgtaggaccatatgagagg 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 811
Length adjustment: 9
Effective length of query: 404
Effective length of database: 802
Effective search space:   324008
Effective search space used:   324008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)