BAC Information

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BAC

Clone NameMSMg01-126G24
Chromosome2 (Build37)
Map Location 156,440,653 - 156,440,902
singlet/doubletsinglet
Overlap genenone
Upstream geneMyh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
Downstream geneDlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G24.T7 (MSMg01no126_g24.b1)MSMg01-126G24.TJ (MSMg01no126_g24.g1)
ACCAG335252AG335253
length707724
length of high quality
(start - end)
412 (42 - 453)250 (74 - 323)
definitionCHROMAT_FILE: MSMg01no126_g24.b1 PHD_FILE: MSMg01no126_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:49 2005CHROMAT_FILE: MSMg01no126_g24.g1 PHD_FILE: MSMg01no126_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCCGCGGAATTC
ACTGATAAGTGCATATTAGCCCAAAAGCTCCAAATACTCAAGATAACAAT
TTGCAGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGGTGCT
TCTATCCTTCTTAGAAAGGAAAACAAAATACTCACAGAAGCAAATATGGA
GATTAAGTGTTGAGCAGAGACTGGAGGAAAGCCACCCAGAGACTGTCCCA
CCTGGGGATTCATCCCATATACAGTCACCAAACCCAGACACTATTGTGGA
TGCCAGGAAGTGCTTGCTGACAGGAGCCAGATATAGCTATCTCCTGAGAG
GCCCTGCCAGAGCCTTACAAATACAGAGGTGGATGCTCGCAGCCAACCAT
AGGACTGAGTGGGGGGCTCCCAGTAGAGGAGTTAGAGATAGGACTGAAGG
AGCTGCAGGGGCTTGCAACCCCATAGGATGAACAACAACATCAACCAACC
AGAGCTCCCAGGGACTAAGCCATCAACCAAGGAGTACACCTGGAGGAATC
CATGCCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGCCATGCATCAAT
GGTAGGAGACGCTCCTTGGTTCTATGAAGTTTCAGTGCAAGGCAATTGAG
GGTGGGAAGGTGGAAGTCCTTTCCCTCTTTTTCCCCCTTATCTCTCCCTT
TTCCCTC
NTTTCATGCTGTGGGAGCCTGGNGGCGCCTGGCTTCGTCACGGGGGTGAA
CTATAGAAGGTTTGCAGCATTCTTCCCTCAGGTGGCTACCTCTCTCCCCT
TCCTCTGGTATAGAAAACTGTGCGCTGCCTGGGCCAAGGGTGGTCCGAGG
GGCCTGAGCCAGACTGTTAAGGACAGCGGGACTGGGTGGGGCCGCAGAGC
TGGCTTCCGGGCTGATAGCCGAGGCTCGGGTTGGGGGGCCATCCTCCCCC
TCAGCTGTTCTTCAGCGACTGCTCAACAAGCTCCGAGTATGTTCCCAGTA
GCTTCTGACGATGCTGTCTGTGCATGCGTGTCAGGCGCGTGTGCCTGTGT
CTGTATTGTGGTAGGGGTCCCACAGAGTGCGTGTTCCCTTCTCCTTTTTT
TCTCTCCTCCCTCTTTTCCCCTTTTTTTTCCTCCTCTCCCTTTTTTCCCC
TCCCCCCTTTCCTTCTTTTTTTTCCCTTTTCTCCCTTTCTTCCCTCTTTC
CTCTCCTTTCCCTTTTTACCTCCCTTACCCCTTTCTATCTCCTTCCCCTT
TTCTCCTTCTTTCCTATTTATCCCCCACCCACCCCTATTCCTTTTCATCC
CTTCCCCCTTTTTGCTCCTTCTCCTTCCCGCTTCTTTTCCTTCCTCTCCT
TTCTTACTCCTTCCTTTTTCCTTCCCTCCTCCCTCTTCTCTTTTTTTTCT
CTTTCTGTCAGTCGCCCCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g24.g1 MSMg01no126_g24.g1 CHROMAT_FILE:
MSMg01no126_g24.g1 PHD_FILE: MSMg01no126_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:49 2005
         (250 letters)



>mm_chr2_156440453_156441102
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 247/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctcaggtggctacctctctccccttcctctggtatagaaaactgtgcgctgcctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tccctcaggtggctacctctctccccttcctctggtatagaaaactgtgggctgcctggg 260

                                                                       
Query: 61  ccaagggtggtccgaggggcctgagccagactgttaaggacagcgggactgggtggggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagggtggtccgaggggcctgagccagactgttaaggacagcgggactgggtggggcc 320

                                                                       
Query: 121 gcagagctggcttccgggctgatagccgaggctcgggttggggggccatcctccccctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagagctggcttccgggctgatagccgaggctcgggttggggggccatcctccccctca 380

                                                                       
Query: 181 gctgttcttcagcgactgctcaacaagctccgagtatgttcccagtagcttctgacgatg 240
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgggcttcagcgactgctcaacaagctccgagtatgttcccagtagcttctgacgatg 440

                     
Query: 241 ctgtctgtgc 250
           ||||||||||
Sbjct: 441 ctgtctgtgc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)