BAC Information

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BAC

Clone NameMSMg01-126H24
Chromosome2 (Build37)
Map Location 85,913,880 - 85,914,193
singlet/doubletsinglet
Overlap genenone
Upstream geneTnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1
Downstream geneOlfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126H24.T7 (MSMg01no126_h24.b1)MSMg01-126H24.TJ (MSMg01no126_h24.g1)
ACCAG335298AG335299
length702726
length of high quality
(start - end)		64 (258 - 321)314 (103 - 416)
definitionCHROMAT_FILE: MSMg01no126_h24.b1 PHD_FILE: MSMg01no126_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:54 2005CHROMAT_FILE: MSMg01no126_h24.g1 PHD_FILE: MSMg01no126_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCTAAATTTGCGGCCGCAAANGAANCCTAGAGTCCGNAGCNGCCCGGAA
NCAAAGCNGGTTACCGGAACCGCGGGNANANAANCNNNANGACNNCANCN
NNCCCCNCAGCAGAGCTCACCCNAACGAGGACAGAAAGGAGGNAAACANA
GAGCAAAAGGAAAGNCAGAAGGAAGGACCCAAGGGGGACGGGGCATGCTC
ACAACCCCAGAGACNAAGAGGCGAAGGCAGCAGGAACAAGGCAGCCAAAT
TCTTTTTCATTTGTATATAGAATGGCAAAGGACTATTTCTCAAAACACAA
ATATATATATATATATATTTTTATTTTTTGACAGACAGACAGACAGACAG
AGACAGATATAGATATCCCCCCCAGACACAGACAGAGAGGGGCCCCGACA
CGGACGAGCCCAGCCCACCCACCCCCAAACAAAAAACCAAAACCACAAAC
CACCCCCCCCAACCACCAAAACAAACCCCCCACCACACACGCCGAACAAG
CACAACACCACCCACCCCCAAACCCACCCGACCCAACCACACCCACCACC
AACCCACAAGACACCACCACACACCCACACAACAACCACACCACGACCCC
AACCAACAAACAAAAAAAACCCCCCCACACACAACCCACCCAAACCACAA
CCACACCAAACCCCCCCACCACTTTCTTTTTTTTTTCTCATCTCTCCTCC
TA

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTAATCAAGAAATCCTCTGTTATTACAGAGTAATA
CTTACATGCCATAAAAGAGCACACATTTAGTCATGACTGAACAAACTCAG
TTTTAATTTATGTTTTCTAATGTTAAGATATTATATTTTATATGTAAAAA
TGGCATACTATTTATAATTACTGGAAAATTAAATTCTGATTATAAAATAT
AGACTACTTATCTTGGTCAAAGTTTTTGTAGATTTGAAAGCCCTTAACTT
TGGTTCTAATTCACATACTGAGAGAAACTTAAGCTCTTACTAGGGTATTT
TGCACATTCTCAATGAAGTTTCATTGATTAAAAAGTCATTTGCATATGTG
AATTTTACTATATCTTGTGTATATCAAAATGATAAAATATCTATCCTCTT
CACAATGAGCATGGGAATAAATAGTTCTACTTAGTCCTCATGCTGAAACT
TTAAATTTTACAAAATTTACTATGAATAAATAATCATACTAATCGCCCTA
ATATAATATCCAATTCCTTATTTATCCATTGATCATACATAAAATCCTAA
TCATAGTGTCCCCTCCTTCCTCTTGTAAGAGATTTTCACGTGAAAATAAG
TTCAATATTTTTTGCATACTCCCCTCATTTACCGGAATTAAAAGAATTTC
ATCAACGCATGACCGATTCCCTGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_h24.g1 MSMg01no126_h24.g1 CHROMAT_FILE:
MSMg01no126_h24.g1 PHD_FILE: MSMg01no126_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:55 2005
         (314 letters)



>mm_chr2_85913680_85914393
          Length = 714

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%), Gaps = 2/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatgccataaaagagcacacatttagtcatgactgaacaaactcagttttaatttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatgccataaaagagcacacatttagtcatgactgaacaaactcagttttaatttatg 260

                                                                       
Query: 61  ttttctaatgttaagatattatattttatatgtaaaaatggcatactatttataattact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttttctaatgttaagatattatattttatatgtaaaaatggcatactatttataagtact 320

                                                                       
Query: 121 ggaaaattaaattctgattataaaatatagactactta-tcttggtcaaagtttttgtag 179
           |||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct: 321 ggaaaattaaattctgattagaaaatatagactacttagt-ttggtcaaagtttttgtag 379

                                                                       
Query: 180 atttgaaagcccttaactttggttctaattcacatactgagagaaacttaagctcttact 239
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 380 atttgaaagcccttaactttggctctaattcacaaactgagagaaacttaagctcttact 439

                                                                       
Query: 240 agggtattttgcacattctcaatgaagtttcattgattaaaaagtcatttgcatatgtga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 agggtattttgcacattctcaatgaagtttcattgattaaaaagtcatttgtatatgtga 499

                          
Query: 300 attttactatatctt 314
           |||||||||||||||
Sbjct: 500 attttactatatctt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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