Query= MSMg01no126_j05.b1 MSMg01no126_j05.b1 CHROMAT_FILE:
MSMg01no126_j05.b1 PHD_FILE: MSMg01no126_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:01 2005
(542 letters)
>mm_chr2_126628740_126629681
Length = 942
Score = 1004 bits (519), Expect = 0.0
Identities = 534/539 (99%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggacagcccgggctacacagagaaaccctgtcttg-aaaaaacaaaaccaaa 63
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 204 gaattccaggacagcctgggctacacagagaaaccctgtcttgaaaaaaacaaaaacaaa 263
Query: 64 accaaaagaaagatattgcagccatttcatacactaattcatgtgatttctcttaagcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accaaaagaaagatattgcagccatttcatacactaattcatgtgatttctcttaagcaa 323
Query: 124 acttagtagtcatgtttctagacatatttaacttccctagactgggattcacattttcta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acttagtagtcatgtttctagacatatttaacttccctagactgggattcacattttcta 383
Query: 184 aatttaaattttcatatacttcatcaatttagaaaatcccaacttgtttgcatttcttca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatttaaattttcatatacttcatcaatttagaaaatcccaacttgtttgcatttcttca 443
Query: 244 aattcttgactctcctacagtcaatcagatgactgcctttgtctcttttcttttctatca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattcttgactctcctacagtcaatcagatgactgcctttgtctcttttcttttctatca 503
Query: 304 agatgtactttcatctgtgttggattctggctcaacttagtaattctctgtagattgcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agatgtactttcatctgtgttggattctggctcaacttagtaattctctgtagattgcct 563
Query: 364 cacctgcgcttggcaaattattactgtgtagccaggttgatctgaaatctgctatgtagc 423
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacccgtgcttggcaaattattactgtgtagccaggttgatctgaaatctgctatgtagc 623
Query: 424 aaggctggccttaaataggctccctccgcttttctctgtccccagggtctaggattacag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaggctggccttaaataggctccctccgcttttctctgtccccagggtctaggattacag 683
Query: 484 gcatgtgctctacacccatggaatacttgtatgatctttttggttttgtgagacagggt 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcatgtgctctacacccatggaatacttgtatgatctttttggttttgtgagacagggt 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_j05.g1 MSMg01no126_j05.g1 CHROMAT_FILE:
MSMg01no126_j05.g1 PHD_FILE: MSMg01no126_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:01 2005
(468 letters)
>mm_chr2_126710753_126711620
Length = 868
Score = 905 bits (468), Expect = 0.0
Identities = 468/468 (100%)
Strand = Plus / Minus
Query: 1 atgaaactgattccatgtgagaacatggattttgaggtcaagtgaatctgttcctgacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atgaaactgattccatgtgagaacatggattttgaggtcaagtgaatctgttcctgacca 745
Query: 61 tggccactcttattgagctccagaataaaccatcttctatcccctttaggtgagagctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggccactcttattgagctccagaataaaccatcttctatcccctttaggtgagagctgg 685
Query: 121 tttttttgtatcaacagcatcgaggtactggcattaaagattaattcaaaatatcccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttttttgtatcaacagcatcgaggtactggcattaaagattaattcaaaatatcccaag 625
Query: 181 tatttatagtttgcatttattaagttttctgtttgtgactaaggggaatacttttgaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatttatagtttgcatttattaagttttctgtttgtgactaaggggaatacttttgaaac 565
Query: 241 agtatctttttaaaaatccaccaatctatccaaagtagagcaaaactggtttaatcacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtatctttttaaaaatccaccaatctatccaaagtagagcaaaactggtttaatcacct 505
Query: 301 tctgtttgtataaaagattctgtgctgactgccaaacactccaaactatcaaactttaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctgtttgtataaaagattctgtgctgactgccaaacactccaaactatcaaactttaag 445
Query: 361 gatcagagaatgttatattaattaaacattccatacactggttttctttctgtttgattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatcagagaatgttatattaattaaacattccatacactggttttctttctgtttgattt 385
Query: 421 gatttgaattacttaatgtcagcattatttctatttcatgttttgcct 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatttgaattacttaatgtcagcattatttctatttcatgttttgcct 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
