BAC Information

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BAC

Clone NameMSMg01-126O09
Chromosome2 (Build37)
Map Location 154,041,184 - 154,041,468
singlet/doubletsinglet
Overlap geneU46068
Upstream geneTspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik
Downstream geneBC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126O09.T7 (MSMg01no126_o09.b1)MSMg01-126O09.TJ (MSMg01no126_o09.g1)
ACCAG335587AG335588
length706729
length of high quality
(start - end)
469 (44 - 512)280 (70 - 349)
definitionCHROMAT_FILE: MSMg01no126_o09.b1 PHD_FILE: MSMg01no126_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:27 2005CHROMAT_FILE: MSMg01no126_o09.g1 PHD_FILE: MSMg01no126_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGA
ATTCTCTGTTTCCCTCCATACTTCATTTTTTTAACTGGGTTATTTGTTTC
TTTTGGAGTCTAACTTCTTGAGTTCTCGGTATATTTTGAATATTAGTCCT
CTTTCTCTATTTCTAAAGTAGCTATTTTCTACTTTCTCTTCTATTAGGTT
TAATGTCGAGGTCCCTGATTGACTTGGACTTGAGTTTTGTGCAGGGTGAT
AAATATGGACCTATGTGTATTCTTCTGCCTGCAGACAACCAGTTAGATCA
GCACCATTTATTGAAGATACTTCCTTTTTTCTATTGTATGGTTTTGGCTT
CTTTGTCAAAACAACACAAAACAAAACCCCAAGTGTCCATAGGTGTGAGG
GTTTATTTCTGGCCTTTTGATTCTAGTCCATTGATTAACCTGTCAGTTTC
TGTACCAATACCATGCAGTTTGTTTGCTTTTTTTTTCTTTCTTTGAATCA
TTATTGCTCTGTAGTACAGCTTGAGGTCACGGATGGTGATTCCTCCTGAA
GTTCTTTTATTGTTCAGGATTATTTTGGCTATCCTGGGCTTTTTGTTTTT
CCTTATGAAGATGGGAATTTCTCTTTGAAGGTCTATAAAAATTTGCGTTG
GACTCTTGATGGGAATTACATTGAATCTATACATTGCTCTTATCAAGATG
TTTTTC
GAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAATAGAAGAATGAAGGGACTCTACAGGAG
CCACAGAACAAGGAAACCCCACCACTGGGATGGTCTGCACGCATCACCCC
AGGCTTCAAACTGCCCATTCTGAAAATTTTCAAGACAAAAGCTATAACAG
CCTATATACTAAACCCTTGGGGCCCAGCATTGAAGTGGTCTCTGCACCCC
TGCCAGTCCTGCAAGGTCTACCACCTTTTGTCTCAGATTGAGTTCAGCGA
ACTGGAGGCTCCAGTAATAAAGTTAGGCTCAGGACAACATTCTGATCTGT
CTGTACAGGCTGAGATAATAGCTAGGTATAATGGATGGATGGATGGATGT
ATGTCCCCCCCCCTTTCGTTTCTCCTTACTTTCCCTTCCTTGTCTTCCCT
TCCCTTTTTCCCCCCTTCCTATTCTCTCTTCCCTCCTTCTTATCCACTTT
CCATCATCCCAAACACACCCTAATCATCCCCCCCCACTTTCTTACCCTTT
CCACCTTTACCCCCCTACCCACAATTCCTTTCATTTCCCCCACCTTTCCC
CCTATTTCCTCCCTTTTTCTCCTCCTCTTTCCTTTTCCCGCTTTTTCCCT
CCCCCCCCCATCCCTCTTTCCTTTCCCCCCTTTCCCCTCCCTTTTCCCTT
TCGCCTCTTTTTGTTATTCCGACTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_o09.g1 MSMg01no126_o09.g1 CHROMAT_FILE:
MSMg01no126_o09.g1 PHD_FILE: MSMg01no126_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:27 2005
         (280 letters)



>mm_chr2_154040984_154041668
          Length = 685

 Score =  443 bits (229), Expect = e-129
 Identities = 269/285 (94%), Gaps = 5/285 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatagaagaatgaagggactctacaggagccacagaacaaggaaaccccaccactggg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacagaagaatgaagggactctacaggagccacagaacaaggaaaccccaccactggg 260

                                                                       
Query: 61  atggtctgcacgcatcaccccaggcttcaaactgcccattctgaaaattttcaagacaaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 atggcctgcacgcatcaccccaggcttcaaactgcccattctgaaaaatttcaagacaaa 320

                                                                       
Query: 121 agctataacagcctatatactaaacccttggggcccagcattgaagtggtctctgcaccc 180
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 agctataacagcctagatactaaacccttgggacccagcattgaagtggtctctgcaccc 380

                                                                       
Query: 181 ctgccagtcctgcaaggtctaccaccttttgtctcagattgagttcagcga-----actg 235
           |||||||||||||||||||||||||||| |||| |||| ||||||||| ||     ||||
Sbjct: 381 ctgccagtcctgcaaggtctaccaccttctgtcccagactgagttcagtgactccaactg 440

                                                        
Query: 236 gaggctccagtaataaagttaggctcaggacaacattctgatctg 280
           |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 441 gaggctccagcaataaagttaggctcaggagaacattctgatctg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 685
Length adjustment: 9
Effective length of query: 271
Effective length of database: 676
Effective search space:   183196
Effective search space used:   183196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)