BAC Information

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BAC

Clone NameMSMg01-127G13
Chromosome2 (Build37)
Map Location 162,686,982 - 162,687,441
singlet/doubletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696
Downstream geneLOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127G13.T7 (MSMg01no127_g13.b1)MSMg01-127G13.TJ (MSMg01no127_g13.g1)
ACCAG335960AG335961
length727705
length of high quality
(start - end)
256 (42 - 297)539 (69 - 607)
definitionCHROMAT_FILE: MSMg01no127_g13.b1 PHD_FILE: MSMg01no127_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:08 2005CHROMAT_FILE: MSMg01no127_g13.g1 PHD_FILE: MSMg01no127_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGAGTAACGAACATCAAAGGAGAGGGTAGAGAATGGGGACAAGGATGT
AGCTAAATTGGGAGAGTCCTTGTCTAACATACACAAAGTCTTGTGTGCCA
TCCTCAGCACCAAACAAAAACACACATGGTCACACACACCTGAGCCCCTG
CGCTCATTCGGGAGGTAGAGGCAAAAGTTCAAGACCATGCATAGCTATAC
ATAGCAGGTTTCAAACCAAAGTGTGTTATGTAAGACCCTATCTCAAAAGA
GGAGGAGGAGGATAAGATGGAGGAAGGCTTCTGTACCGTCCCATTTTGCA
TTCTTGTCCTATACTGCACTGTGAACCATGAAACCACTCTTCTTCTGTGG
TAAGAGCGCCCTCTGTTGTTATCTAACTGTCCGCCACGCGCTATGAATTG
TCGCCATAAGCCCGAACCGTTTCATTTTACCACACCTTCTCTCTCTCACC
ATTCCGCCCTTACCTTCCTCACCATCTCCCTGCCTTACTTATTTCTCCAC
CCCTCCTCTCTATTCCCTTCCTTCTTCACTTTTCCTACTTTCCAATAACT
ATCGTCACCTTTCTATTATCCCTTTCCTATCCCCCTCTTCCCGCCCTTCT
TCTTCACTTTTTCCCCCCATTTCTTTCTCCTTATCATTTATCCTACGCTC
TTTTCCTTCCTATACTCTTCCCTTCTT
GATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGCCCGCTGCCTTGGAAGCCCTGGGATGTAG
TTCACCATATAGCACCGCTACACTGTGCTACTGATACTAAGGGCGGCATC
TGGACACAGATGCATGGAGGGAATGCTTGTCTTTATCACATGATGAAGTC
GGCTTTGGTGGTGATCATAGATCTAAAGGATTTCTACATAAAGGCAGATT
CCAACAGGGAGCTTTGGGGGAAACTTGGACTCCTACCATAATCCTGTGAG
GTTAGTATTAACTACTGTATTGTTAATTGTCTCACTTGCATCCCAGGCTG
GCACGGAGACTCACCTGCAGCTCAGACTGGCTGAACCTTCAACATCCCTC
TTGCCCCCCCACCCTGAATGCTGGGATTGTAGGCAGGAGCTGCCAAGCTT
GGCTGGTATTATTACACCTGCTGGGACTCCAAAAGGAAGGAAGGCTGCCC
TGAAACATTTCTCTTAGGGAAAGAGCTGTAGACCTATCACAGGAACCCGG
TCTGGACCACCCATCCTTAGCTGACCATTTCTCTACTTAGCAAACATCTA
TGGAAAGTTGGCCTTGTCGGTCCTCAAACTGCTATCCCAAGAGCATCATC
CGGCATTTTGCCAGGAATGTAAATTCTCAGGCCTACCGAGACCTACTGGA
CGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_g13.g1 MSMg01no127_g13.g1 CHROMAT_FILE:
MSMg01no127_g13.g1 PHD_FILE: MSMg01no127_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:08 2005
         (539 letters)



>mm_chr2_162686982_162687920
          Length = 939

 Score =  797 bits (412), Expect = 0.0
 Identities = 448/460 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcccgctgccttggaagccctgggatgtagttcaccatatagcaccgctacactgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 460 ctgcccgctgccttggaagccctgggatgtagttcaccatatagcagggctacactgtgc 401

                                                                       
Query: 61  tactgatactaagggcggcatctggacacagatgcatggagggaatgcttgtctttatca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tactgatgctaagggcggcatctggacacagatgcatggagggaatgcttgtctttatca 341

                                                                       
Query: 121 catgatgaagtcggctttggtggtgatcatagatctaaaggatttctacataaaggcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 catgatgaagtcggctttggtggtgatcatagatctaaaggatttctacataaaggcaga 281

                                                                       
Query: 181 ttccaacagggagctttgggggaaacttggactcctaccataatcctgtgaggttagtat 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttccaacagggaactttgggggaaacttggactcctaccataatcctgtgaggttagtat 221

                                                                       
Query: 241 taactactgtattgttaattgtctcacttgcatcccaggctggcacggagactcacctgc 300
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 220 taattactgtattgttaattgtctcacttgcatcccaggctggcatggagactcacctgc 161

                                                                       
Query: 301 agctcagactggctgaaccttcaacatccctcttgcccccccaccctgaatgctgggatt 360
           ||||||||||||||||||||||||||||||||||||  |  || ||||||||||||||||
Sbjct: 160 agctcagactggctgaaccttcaacatccctcttgcttcagcatcctgaatgctgggatt 101

                                                                       
Query: 361 gtaggcaggagctgccaagcttggctggtattattacacctgctgggactccaaaaggaa 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 100 gtaggcaggagctgccaagcttggctggtattattacacctgctggaactccaaaaggaa 41

                                                   
Query: 421 ggaaggctgccctgaaacatttctcttagggaaagagctg 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  ggaaggctgccctgaaacatttctcttagggaaagagctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)