BAC Information

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BAC

Clone NameMSMg01-127G17
Chromosome2 (Build37)
Map Location 126,270,409 - 126,270,677
singlet/doubletsinglet
Overlap genenone
Upstream geneFbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127G17.T7 (MSMg01no127_g17.b1)MSMg01-127G17.TJ (MSMg01no127_g17.g1)
ACCAG335968AG335969
length715704
length of high quality
(start - end)
269 (71 - 339)335 (68 - 402)
definitionCHROMAT_FILE: MSMg01no127_g17.b1 PHD_FILE: MSMg01no127_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:09 2005CHROMAT_FILE: MSMg01no127_g17.g1 PHD_FILE: MSMg01no127_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATTC
TTTATTTTCAAACCAAACAAACAAACAATGCTTTTATTCTCTAACCTGGT
ATGGTTTGTGTTTTAACCATCCACCCTGCCCCTCACTTCTTGCTCTTCCT
TGTATTATCTCTGTTATAATGTCACAGGGTCTTGCCAGCAAGAATAGTCA
TATGAAACTATTTCTCACCTTTACTCCAGAGCTAAATAAGTACACGACAT
GCATGTCTACATACATAGCTACTTCACTTAAATCTCTACTCAGCAAGTAT
CTCCCAAACTCACTGGATGCTAGGTCCGGCTCTATATGTTAAGAATATAT
AAACAAGAAACCAGACACAGCCTTAGCTGTGTAAATTTCCAGAGGGAAAG
ATTGTGTCCCACCCCCTAATGTAATTTCAGGATTCCTATGCCCAGCGTTA
GGCGCCACACCCATGCACATGTGGCCAGCACCAATTGGACTTAGGGCATT
AGTTACCGCTTCGAATGCCCTGTCATGCAGTTGGAACGTACATTATCGCG
CAGCCGAACATATCGCCTCCTTGCTCCACTTCCTACTTTGTCCTCATTGT
GCTCGCATTGCTCTTTTCCCTACCTTTCCCCCCTCTTTCCCCCCATCTTT
TCTTTTTTCCCACTTTCCTTTTCTTTCTATTATTCTACTCTCTTTCCTAC
TCCCTCTCCTTTCCT
GATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAAATCCATCTGCCTCAGCCTCCCAAGTGTTAG
GATTACAGGAATGTCCCCACACACTGAGCTAATTAGCACCTGTGTCATCT
GATTTTGGTTCTTTGAAATGGGATCTTATGCTACTCAGGCTGGCCTCTAA
CTCTGTATGTAGTCTAGGCTAGCCTCGACTCCTGATCCTTCTCCTTCCGC
CGCCCCAGTGTTGGAGTTGCAAGTGTGTGCTACCACCAAACTTGGCAGAA
TGTGTGTATGCGTGTGTATGCTCATGTCCCAGTATGCACATAGATGTTCG
AGGACAACTGTCTGGGGTTGGTTCCCACTTTTCACCATGGATTCTGGGGA
ATCACCCCCACGTCATCTGTTTTAGGTTTGAACAGTAAGCACTTTTACCA
ACTGAGCATCTCACTATTCCTTAGTCCTTTTAAAGAAGCCGGCTGATCCT
TCTGTAGGTGACATGAGAATGACACTGTGCTGAATACTCTGGCATCTGCC
CTTCATTTTCATGAGTCTGGTTTATTGTGGGCAAGGGATAACTCGAGGCT
ATTCTTTGAACCACGATGAGGCCTTTTTGTCCGCCTTGATACCTTTTTCT
CCCTCTTTTTCTCTCTCTTTCCCTTCCTTTCCCTCTTCTTTTTCTTTTCC
CCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_g17.b1 MSMg01no127_g17.b1 CHROMAT_FILE:
MSMg01no127_g17.b1 PHD_FILE: MSMg01no127_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:09 2005
         (269 letters)



>mm_chr2_126270224_126270892
          Length = 669

 Score =  478 bits (247), Expect = e-139
 Identities = 264/271 (97%), Gaps = 4/271 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaacaatgcttttattctctaacctggtatggtttgtgttttaaccatccaccctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acaaacaatgcttttattctctaacctggtatggtttgtgttttaaccatccaccctgcc 395

                                                                       
Query: 61  cctcacttcttgctcttccttgtattatctctgttataatgtcacagggtcttgccagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cctcacttcttgctcttccttgtattatctctgttataatgtcacagggtcttgccagca 335

                                                                       
Query: 121 agaatagtcatatgaaactatttctcacctttactccagagctaaataagtacacgacat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agaatagttatatgaaactatttctcacctttactccagagctaaataagtacacgacat 275

                                                                       
Query: 181 gcatgtctacatacatagctacttcacttaaatctctactcagcaagtatctcccaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcatgtctacatacatagctacttcacttaaatctctactcagcaagtatctcccaaact 215

                                          
Query: 241 cactggatgctaggtccg--gctctatatgt 269
           ||| ||||||||||  ||  | |||||||||
Sbjct: 214 cacaggatgctagg--cgtggttctatatgt 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)