BAC Information

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BAC

Clone NameMSMg01-127K17
Chromosome2 (Build37)
Map Location 163,166,861 - 163,167,198
singlet/doubletsinglet
Overlap geneJph2
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389
Downstream gene3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127K17.T7 (MSMg01no127_k17.b1)MSMg01-127K17.TJ (MSMg01no127_k17.g1)
ACCAG336145AG336146
length738719
length of high quality
(start - end)
199 (37 - 235)340 (66 - 405)
definitionCHROMAT_FILE: MSMg01no127_k17.b1 PHD_FILE: MSMg01no127_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:30 2005CHROMAT_FILE: MSMg01no127_k17.g1 PHD_FILE: MSMg01no127_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
GTCTCCGCATCTCCAGTGACAGGGTTATAGGCAAACACAGCCATGCCCAA
ATTTCTCCATGGGTACTGGGAGTCCTGTCTCATGTATTCGTGCTTGGGGC
AGGCAGACACTTTCTGATGTATCAGGTGTCTATCCCCTCCAGTCTTTCAT
GTAGTTTGCTTGTTTGTTTGTTTGTTTGTTTACAGCGCTGAATAGCAGAC
CCAGAGTTTCTTGCATGCTATGCTAACGTATGATCACTGACCTATATTGT
CAGTCCTTTTTTTTTCCTTCATATGACTACTGTTTGTTACTTATGTCTCG
ATCTGCCTACCGATTATGCTGGTGACTACTTGCAAAAGATTCTTATTTTT
GTCCCCCCAACTGGTTTAATTTGTTATACCTCCCTACCACTCTCATTACT
TTATTACCCTTTTGACCCTCTGCCTTACCATATTTCTCTCTCCATTCATA
ATCCCCCTTTGCCTCTTTCATTACGTCTCCTTGTCCCATCCCTATCTTGC
TTCCTTCCCGACTCCCTGTTTTCCCTTCCATTCTTCCTCTTTCCTACTAT
CTACTTTCTTCCTGCTCTACCTTTCCTATTTTTCATTTCTTTTCCCCTCT
CTCCCTCCATGCTTTTACTTTCTACCCTCCATTTCTTTTTCTTCTCATAT
TTCACACCATCTTTTTCTCCCTCTCTTCTTCACTTCTG
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCTCAAACTTTTGAAAGTTGCAGAGAGCCCTTTG
ACCTTCTCATGCACCACAGACCTGCCCCTCATCACAGCATCACCAGCTCC
CCCTCCCATCTGCCTTACCTAGAGTAGAGACAAACTGGGGTAGGTTCTGC
TTATAGCTGGGAACCTCAGCTTTCTCGCCAGTCTTGCATAGAGGCAGAGA
TGTGTGCCCCCTAATATGTCATCTCCTGTTTACATCCCACTCACAGGTTC
CAAAAACGCACAGGCATTCAGAGTTCCACGTGAGCATCTCCACCTTGCAG
CAAATGAAGCAAATGGGTCTGCCCTGCCCATCCCATCCTTGCCTGGCCCT
ACCCCCCTGGTAGAAGTCTGGAGCCAGCTCCTTGGCCAATGTACGGGCGA
TGTTGGACTCCTGGTTGGCAGCCAGGGCAGCCTGTTCTGCTGCCTCGGCC
TTGGCTTTGGCATGGCTTGTCCTAGGGAGACAATATAGTGGGAGGTTTAG
AATCTAGCCCTCTGCCCATCCTCTCTAAGATCCAGCAAGTCCCTCTGGAC
CGATATTCTCACTTGGTATGCCACTGACTATTACAGTCCTCTGTCCCAGA
CCACTGTGTACCCTCTTATACAGCTTGTTATGTCTCTGGGTAACGCCCGA
CCTCATTCCTTCCAGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_k17.g1 MSMg01no127_k17.g1 CHROMAT_FILE:
MSMg01no127_k17.g1 PHD_FILE: MSMg01no127_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:30 2005
         (340 letters)



>mm_chr2_163166661_163167400
          Length = 740

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcaaacttttgaaagttgcagagagccctttgaccttctcatgcaccacagacctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcaaacttttgaaagttgcagagagccctttgaccttctcatgcaccacagacctgc 260

                                                                       
Query: 61  ccctcatcacagcatcaccagctccccctcccatctgccttacctagagtagagacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcatcacagcatcaccagctccccctcccatctgccttacctagagtagagacaaac 320

                                                                       
Query: 121 tggggtaggttctgcttatagctgggaacctcagctttctcgccagtcttgcatagaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggtaggttctgcttatagctgggaacctcagctttctcgccagtcttgcatagaggc 380

                                                                       
Query: 181 agagatgtgtgccccctaatatgtcatctcctgtttacatcccactcacaggttccaaaa 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagatgtgtgccccctaatatctcatctcctgtttacatcccactcacaggttccaaaa 440

                                                                       
Query: 241 acgcacaggcattcagagttccacgtgagcatctccaccttgcagcaaatgaagcaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgcacaggcattcagagttccacgtgagcatctccaccttgcagcaaatgaagcaaatg 500

                                                 
Query: 301 ggtctgccctgcccatcccatccttgcctggccctacc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtctgccctgcccatcccatccttgcctggccctacc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)