BAC Information

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BAC

Clone NameMSMg01-127L16
Chromosome2 (Build37)
Map Location 172,827,519 - 172,827,711
singlet/doubletsinglet
Overlap geneRae1
Upstream geneCbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11
Downstream geneRbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127L16.T7 (MSMg01no127_l16.b1)MSMg01-127L16.TJ (MSMg01no127_l16.g1)
ACCAG336190AG336191
length697725
length of high quality
(start - end)
195 (128 - 322)44 (69 - 112)
definitionCHROMAT_FILE: MSMg01no127_l16.b1 PHD_FILE: MSMg01no127_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:35 2005CHROMAT_FILE: MSMg01no127_l16.g1 PHD_FILE: MSMg01no127_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAATCTCTAAATTTGCGGCGCTAAACGACTCCTATAATCCGAGGTGCGC
GGAATCCAGGCCATTTCCAACAACAAGAGGCTGTGTCTCTGTCTCTGTCT
TGCGCGCGCGCACACACATTTTCTCCACACTATTATTTTTAGAGCATTTT
TAGCCTCTGGAAGCTACGAAGGAAGACTTTCCTACATCCACATCCACTTT
ACTGTCTAGGGAGGATGCCCTTGCTAGCACTAGGGCACCAATGCAGACAT
ATTATTGTGCTTCAGTCAGCAGCTAGGAAAGAGGTATCACTCTCCAGAGT
CAGAACTGCACACTGGGCACTTAGCTGATTTCAGAGGGGCCTCCTGAGCC
CAGGGTCCCCCTTCCTCTCTACTTTAGCTCAATGTCTACATGAAGTTACC
TAGAACGAACAACCTTCCCCCCCCCGAGTTCCACAATTTCTCAGGGTCCT
AAGAAAATCTGTTCATGCCAGGCAGTGGCGGCTCATGCCTTTAAATCCCA
GCATTTGTGAGGCAGAGTGTTCTGTATCTCTGAGAGTTGAGGCCCACCTT
GTCTATTGACTGAGCTTCAAGACAGCCAGTGCTACACAGAGACCCCGCTC
TTAAAACACCTTTTTTGACCAGACCCATCTCTAGTAATCCACTCTGGCCC
ACTGACTATTGATTTCCTGTCGTGACGTCGCAGACTTGGAATCATCC
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAAAAAATCTCTCCATCAGATTGTGGCTATTTCTTGGCTA
CCCATTGATGCATGAGGCCTCAGCCCATCGTGGGCGGCGCCATCCCTAGG
CAGGTAGTTCAGTGCTGCATAAGAAAAGTTCCTGAGCAAATCAGAAAAAG
TAAACTAGTGGGCAGCATTTCGCAGTGGTTTCTAATTCAGTTCCCACTTC
TGTGTTCCGGTCTTGAGCTTCCATTTTGGTGCCTTAGCTACTGCTCTATT
GATGTGGAGAGACATTTTTTTTTTGAAGGCAACTTACACCAGAGAGCCTA
TAATTGGGGGTGGCTTACATTTCTAGAAGATGAGTCTCTAGACTCATCAT
GTCATCTGGCCCCCCCCCCGCTGGAACAGTAGCTGAGAAGTTACCTCTGA
ACTACTGGCTCACGCCTTAGTGGCGCCGCTTTAATGACCAGGAAGGTGCA
CAGGCTTCTCCTCCTCTTTTCCCTCCATTCCTTTTCCTTCCGCTTTACCG
TTCTCCCCCTCCCCTACCCTTTTCCCTCACTTTACTCTTTTACCCATTCT
CCCTCCTATCCCTCTAAACTTCCCCCCTTTTCCCCCTTCTATTTCCTCAT
TTCTCGCTCTTTTTCCTTTTTCTGCCCTCTTCCCTTTTTTTCCTTCATCC
CCTACCTTTTCTCCCTCTTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_l16.b1 MSMg01no127_l16.b1 CHROMAT_FILE:
MSMg01no127_l16.b1 PHD_FILE: MSMg01no127_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:35 2005
         (195 letters)



>mm_chr2_172827319_172827913
          Length = 595

 Score =  327 bits (169), Expect = 3e-94
 Identities = 187/193 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactattatttttagagcatttttagcctctggaagctacgaaggaagactttcctacat 60
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 393 cactattatttttagagcattgttagcctctggaagctatgaaggaagactttcctacat 334

                                                                       
Query: 61  ccacatccactttactgtctagggaggatgcccttgctagcactagggcaccaatgcaga 120
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 333 ccacatctactttactgtctagggaggatgcccttgctagcactagggcaccaacgcaga 274

                                                                       
Query: 121 catattattgtgcttcagtcagcagctaggaaagaggtatcactctccagagtcagaact 180
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catattacagtgcttcagtcagcagctaggaaagaggtatcactctccagagtcagaact 214

                        
Query: 181 gcacactgggcac 193
           |||||||||||||
Sbjct: 213 gcacactgggcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)