Query= MSMg01no127_l21.b1 MSMg01no127_l21.b1 CHROMAT_FILE:
MSMg01no127_l21.b1 PHD_FILE: MSMg01no127_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(472 letters)
>mm_chr2_77478570_77479441
Length = 872
Score = 826 bits (427), Expect = 0.0
Identities = 457/467 (97%), Gaps = 2/467 (0%)
Strand = Plus / Plus
Query: 6 gaattccatgaactatatgccaataacaccaaggccaagaagccattgaatagatgcata 65
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccatgaaccaaatggcaataacaccaaggccaagaagccattgaatagatgcata 265
Query: 66 cttagggagtaatatagactgaatgtaaaaaattaacttttagtataatgttacacttat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttagggagtaatatagactgaatgtaaaaaattaacttttagtataatgttacacttat 325
Query: 126 caaaataaaacacaacgataagaaaaacagcatgggctggaaagatggcagtcagtggtt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caaaataaaacacaacgataagaaaaacagcatgggctggaaagatggcagtcagtggtt 385
Query: 186 aaaaacactgactgctcttccagaggtcctgagttcaatccccaacaaacaggtggtggt 245
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 aaaaacactgactgctcttccagaggtcctgagttcaatccccaacaaacacgtggtggt 445
Query: 246 tcacaaccatctgtaatgggatctgatgccctcttctggtgtgtctgaagacagctacag 305
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcacaaccatctctaatgggatctgatgccctcttctggtgtgtctgaagacagctacag 505
Query: 306 tgtattaatataaaacaataaaataaacaaacaaataaatcgtttttaaaaaagaaagaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtattaatataaaacaataaaataaacaaacaaataaatcgtttttaaaaaagaaagaa 565
Query: 366 aaacattgtgtcgc-tcactatctattttaggacaaggaaatttaaatgaccagctgcag 424
||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaacattgtgt-gtatcagtatctattttaggacaaggaaatttaaatgaccagctgcag 624
Query: 425 tcattaaatacacaggatcatgaacctgcgttagaaaggatgttagc 471
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 tcattaaatacacaggatcatgaacctgtgttagaaaggatgttagc 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_l21.g1 MSMg01no127_l21.g1 CHROMAT_FILE:
MSMg01no127_l21.g1 PHD_FILE: MSMg01no127_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(337 letters)
>mm_chr2_77580099_77580835
Length = 737
Score = 590 bits (305), Expect = e-173
Identities = 323/329 (98%)
Strand = Plus / Minus
Query: 9 aaaaaaatgtgtcttcggggaacaatcattaatatgtacaggcgcacacatagcccaaat 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaaaaaatgtgtcttcggggaacaatcattaatatgtacaggcgcacacatagcccaaat 308
Query: 69 actctttccgagggatttttctaagtagccaaagcaggagggtggggggagatggaaata 128
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 actctttccgagggatttttctaagtagccaaagcaggagggtgaggggagatggaaata 248
Query: 129 tggctcagtggtggagcctgtgcctagcaacattcaggttccgcaactaagacgcatctg 188
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 247 tggctcagtagtggagcttgtgcctagcaacattcaggttccgcaactaagacgcatgtg 188
Query: 189 ccattgatggctgcaggggaagggaaaatcagttgtctgcaatggagtgtcactgggtat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 187 ccattgatggctgcaggggaagggaaaatcagttgtctgcaatggagtgtcactgcgtat 128
Query: 249 agcaaccatattccagggcagactccagacccaggaggagctgaccaacatgaaaaaatt 308
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 127 agcaaccatattccagggcagactccaggcccaggaggagctgaccaacatgaaaaaatt 68
Query: 309 actttggagagtatgtgtatggtgtgtgt 337
|||||||||||||||||||||||||||||
Sbjct: 67 actttggagagtatgtgtatggtgtgtgt 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
