Query= MSMg01no127_p20.b1 MSMg01no127_p20.b1 CHROMAT_FILE:
MSMg01no127_p20.b1 PHD_FILE: MSMg01no127_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:56 2005
(412 letters)
>mm_chr2_27103156_27103967
Length = 812
Score = 694 bits (359), Expect = 0.0
Identities = 393/409 (96%), Gaps = 8/409 (1%)
Strand = Plus / Plus
Query: 4 ggaattcacaactagattctcttactggcacagagctgtccatctatgtgccttgctgtc 63
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacaactagatacttttactggcacagagctgtccatctatgtgccttgctgtc 263
Query: 64 agcttgtctctaacgtacctctactgagcacctactgcatacaaagtagctcctgggaac 123
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcttgtctctaacgtacatttactgagcacctactgcatacaaagtagctcctgggaac 323
Query: 124 ccaggtctggcatccaggggcttatgaaccagaaagcaaagatggagggaggggccccgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaggtctggcatccaggggcttatgaaccagaaagcaaagatggagggaggggcccc-- 381
Query: 184 ggccccctcatggctgcccacggagctgctcatttcagaaagggagcagaaactttctgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ------ctcatggctgcccacggagctgctcatttcagaaagggagcagaaactttctgg 435
Query: 244 ttaaccactgttgccaaaggtctcaatctctgccttgaggctggttgctggccccaccag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttaaccactgttgccaaaggtctcaatctctgccttgaggctggttgctggccccaccag 495
Query: 304 catgagacttcttcgggacaatgcgggatcccgagataagggacccctgacctgcccacg 363
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 496 catgagacttcttcgggacaatgtgggatcccgagataagggacccctgacctgcccacg 555
Query: 364 tgtagcttacccccccaaacccaaacaaaactgaggtcaggctctgctc 412
||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtagcttatcccaacaaacccaaacaaaactgaggtcaggctctgctc 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_p20.g1 MSMg01no127_p20.g1 CHROMAT_FILE:
MSMg01no127_p20.g1 PHD_FILE: MSMg01no127_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:56 2005
(587 letters)
>mm_chr2_27275072_27276058
Length = 987
Score = 942 bits (487), Expect = 0.0
Identities = 537/559 (96%), Gaps = 10/559 (1%)
Strand = Plus / Minus
Query: 30 aagagatctgcctgcctctgcctcccgagtgctgggattaaaagcatgtgtgcccctccc 89
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 987 aagagatctgcctgcctctgcctcctgagtgctgggattaaaagtatgtgtgcccctccc 928
Query: 90 cacctccagccatctctctaacctccctgagccctcttttgaggacactcaggataaagc 149
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 927 cacctccagccatctctctaacctccctgagccctcttttgaggacactcatgataaagc 868
Query: 150 atttgtcatctggcctgtaccttttgtctctgtgtccaggggacagacaaactcagaaca 209
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 867 atttgtcatctggcctgtaccttttgtctctgtgtccaggggacagacaagcttggaaca 808
Query: 210 gagatagtgaagactatctctgttggtg-gtggtgcggctggtgtctgatgtgttatcta 268
|||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 807 gagatagtgaagac---------tgatgcgtggtgcggctggtgtctgatgtgttatcta 757
Query: 269 tgttaagtagatgaagaacaaggtctcctcagtcctgtccccctcctcaggcctcctttc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgttaagtagatgaagaacaaggtctcctcagtcctgtccccctcctcaggcctcctttc 697
Query: 329 tcagattcctcgaaaacaccttttctcccatacgtcttgtgggccctttagctttcttct 388
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 696 tcagattccttgaaaacaccttttctcccatacgccttgtgggccctttagctttcttct 637
Query: 389 ggaattaggtaatcagtgtttgctgtcaagagttagctcagagtattttgggcatcatga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggaattaggtaatcagtgtttgctgtcaagagttagctcagagtattttgggcatcatga 577
Query: 449 gccaggtgacctctgttccagcaccccgacccacacccccaactctgccctcccagcagg 508
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 576 gccaggtgacctctgttccagcacccccacccgcacccccaactctgccctcccagcagg 517
Query: 509 aagggcagctgtagctcttttctgaaccaagagcgaggctgtgctccagtatgatgcagt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagggcagctgtagctcttttctgaaccaagagcgaggctgtgctccagtatgatgcagt 457
Query: 569 tatcgagacagaattctgt 587
||| |||||||||||||||
Sbjct: 456 tattgagacagaattctgt 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
