Query= MSMg01no128_g19.b1 MSMg01no128_g19.b1 CHROMAT_FILE:
MSMg01no128_g19.b1 PHD_FILE: MSMg01no128_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:30 2005
(532 letters)
>mm_chr2_58123615_58124551
Length = 937
Score = 973 bits (503), Expect = 0.0
Identities = 525/537 (97%), Gaps = 11/537 (2%)
Strand = Plus / Plus
Query: 4 gaattcagcaacca--ttctcggatgcatttgttattgttccctaactgcttgatagaaa 61
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagcaaccaactt---ggatgcatttgttattgttccctaactgcttgatagaaa 260
Query: 62 tcaaaatttccacattttaaatg----aatttagccatgtaaatgttcatatttcctttc 117
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaatttccacattttaaatgaattaatttagccatgtaaatgttcatatttcctttc 320
Query: 118 aagaatcagtcaaaaatcattgcctgccaagtaatttcaagttgttctcttgctccttgt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatcagtcaaaaatcattgcctgccaagtaatttcaagttgttctcttgctccttgt 380
Query: 178 atgatggcagatgcctgctccctgccttcaggcagtgcactgcggtcttccctgggactt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatggcagatgcctgctccctgccttcaggcagtgcactgcggtcttccctgggactt 440
Query: 238 ttgcttccactccaagattgccctgagtttgctctgtctcagtaagtcccatggtggcaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcttccactccaagattgccctgagtttgctctgtctcagtaagtcccatggtggcaa 500
Query: 298 aattccaggacagtagacatttcttttatttaatcattctgcaatagacgaagcactcaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattccaggacagtagacatttcttttatttaatcattctgcaatagacgaagcactcaa 560
Query: 358 aacaataagtgattgcggaacttctgatctaatgaatgtgttgtagtttttttttt--ca 415
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 aacaataagtgattgtggaacttctgatctaatgaatgtgttgtagttttttttttttca 620
Query: 416 ttttaaaataaacgccgatttgaaactcttcagacattgcgatcaggttactattttcat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttaaaataaacgccgatttgaaactcttcagacattgcgatcaggttactattttcat 680
Query: 476 acaattatggaaatttaaaatgcaaagttaattgaaaagtataaagatgaaaagcaa 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaattatggaaatttaaaatgcaaagttaattgaaaagtataaagatgaaaagcaa 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 937
Length adjustment: 10
Effective length of query: 522
Effective length of database: 927
Effective search space: 483894
Effective search space used: 483894
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_g19.g1 MSMg01no128_g19.g1 CHROMAT_FILE:
MSMg01no128_g19.g1 PHD_FILE: MSMg01no128_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:30 2005
(385 letters)
>mm_chr2_58271585_58272369
Length = 785
Score = 706 bits (365), Expect = 0.0
Identities = 380/385 (98%)
Strand = Plus / Minus
Query: 1 agtactgagtttcacggccccacatcacagcgtggggtgttcaattatctctatttttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agtactgagtttcacggccccacatcacagcgtggggtgttcaattatctctatttttaa 526
Query: 61 gcattcaagagtcagattatgttatagaccaatctaggataacggaggcaggggatcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcattcaagagtcagattatgttatagaccaatctaggataacggaggcaggggatcagc 466
Query: 121 accctgaaccctaccatcttacatagaagctaaactcacactcctgtccttgttggtcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 accctgaaccctaccatcttacatagaagctaaactcacactcctgtccttgttggtcac 406
Query: 181 cctttacgaagacttttcctcttcaagtgtaaagccaccgaatagtactcccatgtgcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cctttacgaagacttttcctcttcaagtgtaaagccaccgaatagtactcccatgtgcaa 346
Query: 241 ggtgattggttcaagtccaagtgggtcagaacagatttcctgaggaaaaatatgtgtgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggtgattggttcaagtccaagtgggtcagaacagatttcctgaggaaaaatatgtgtgta 286
Query: 301 gccagaaggttcttgtttcgaatagaagtaacctgaggactttggcgcctggctttagtt 360
| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct: 285 gtcagaaggttcttgtttcaaatagaagtaacctgaggactttggtgggtggctttagtt 226
Query: 361 tgagaaggagctgtgtcactccagg 385
|||||||||||||||||||||||||
Sbjct: 225 tgagaaggagctgtgtcactccagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
