BAC Information

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BAC

Clone NameMSMg01-128L21
Chromosome2 (Build37)
Map Location 29,969,178 - 29,969,474
singlet/doubletsinglet
Overlap geneZer1
Upstream geneSetx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12
Downstream geneLOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L21.T7 (MSMg01no128_l21.b1)MSMg01-128L21.TJ (MSMg01no128_l21.g1)
ACCAG336933AG336934
length694693
length of high quality
(start - end)
276 (47 - 322)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no128_l21.b1 PHD_FILE: MSMg01no128_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:56 2005CHROMAT_FILE: MSMg01no128_l21.g1 PHD_FILE: MSMg01no128_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCTAAATTTGCGGCGCTATACGACTCCTATTTCAAGAGGAGCCGCG
GAATTCTGGAAGTTCGACACTGCCCTTAACCTCTGAGCCATCTCTCCAGC
CCTCAGGGCACACTTTTTATAGCAAAAACCAGGTTGAAAGTTTACAGGGC
AGGGAGGGGAGCAGTTGGCTTAGTAGGCAGAGTGCTATCAGCTAACCTGT
AAGCTGAGTAGGGTAAGGGGGTGGAGGGGAATTTCTAAACAGTGAGATAA
CAGAGCATGAGTATCATAATCATAACTTTTTACTTTTTTGCTTAATAGTA
GCATTCTTCAGTGTCAGCCATTTTTTTCACAGTGAGCCCATACATAGGTG
CAGGAAGGTCTGTTCACCGCCCCCCTCTGATTCAAGATATTTTTAGACCT
AACAGTTCATATTGACCCCCCGATTTGAAAAGCTTTGTGGAATTTCTTAA
GATCAGCAAACCTCATACAGAACATTCAGAACAAAACTGGATATGTGGTC
TGCATGTCCTTGAGCTACGTTACTTCTCTGCGTCCCTGACTGGCCGGTAT
GCTACTGCATCATTATGCACCAGTTGGTATGCCTGGCATATAATGGCTAC
CGCCCTTCCAGGTTTATGGCTCTTCTCATGCCTCCCCCCTTTTTCTTTTC
TTTTTTTGCCTTGTCCATCGCCTGACCCCCTTTTTGTTTTCGTT
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCCTGAGCTATAGATTGAG
TCCCTGACTAAATAAAAAGTTGCCCTATTATCCAGTCACAAAAAGTTCTC
ATATAACACTGGGTCATGCTAACTGAAGGAACCAATTATGAAGGTGACAA
CACAGTCCTTGGGCTGTGCAACCACAAAGGACAAGTCTACAGATGGAGGG
AGGACAGCCTGGGGGACAGAGTGACCACTCCTGGGATGGGCTTTCCTTTG
GGAGTGCTGACACTGTATCCACTGAAAACCATGGAACTGGATACTTCAAA
TGGTTGGATTGCGCCTCCCGCGCACTGCACTGAAATTGTTACTTTATAAT
GTAAAGTATGGATGGCCGGAGAGATGGCTTGCTGGTTAAGAGCATCATCT
ACTACACTTGCATAGGCCCTGGGTTCAATTCCCAGAACATACATGGTACT
AGAATTCCAATTCTAGGGGCATGCAGTGCCCAATTAGCTCAGGAAAGAAA
TCAGATCTCCTAGAACTCAGATTACAGATGGTTGTGAGCCACCATGTGCA
GATGAGACCCAAACCCAAGTACTCTGCAAAAGCAAGTGCTGGGAGCAACG
GAGCCGCCTCTCATGACACCTTCCCCAAGATTGCACTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l21.g1 MSMg01no128_l21.g1 CHROMAT_FILE:
MSMg01no128_l21.g1 PHD_FILE: MSMg01no128_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:56 2005
         (290 letters)



>mm_chr2_29968985_29969674
          Length = 690

 Score =  489 bits (253), Expect = e-143
 Identities = 284/297 (95%), Gaps = 7/297 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaccagcctgagct----a--t-agattgagtccctgactaaataaaaagttgcccta 53
           ||||||||||||||||    |  | ||||||||||||||||||||||||||||||   ||
Sbjct: 194 cagaccagcctgagcttttgagctcagattgagtccctgactaaataaaaagttggaata 253

                                                                       
Query: 54  ttatccagtcacaaaaagttctcatataacactgggtcatgctaactgaaggaaccaatt 113
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcatccagtcacaaaaagttctcatataacactgggtcatgctaactgaaggaaccaatt 313

                                                                       
Query: 114 atgaaggtgacaacacagtccttgggctgtgcaaccacaaaggacaagtctacagatgga 173
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 atgaaggtgacaacacagtccttgggctgtgcaaccacaaaggaaaagtctacagatgga 373

                                                                       
Query: 174 gggaggacagcctgggggacagagtgaccactcctgggatgggctttcctttgggagtgc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 374 gggaggacagcctgggggacagagtgaccactcctgggatgggctttcctttgggagtac 433

                                                                    
Query: 234 tgacactgtatccactgaaaaccatggaactggatacttcaaatggttggattgcgc 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgacactgtatccactgaaaaccatggaactggatacttcaaatggttggattgcgc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)