BAC Information

Click to search

BAC

Clone NameMSMg01-128M17
Chromosome2 (Build37)
Map Location 58,497,752 - 58,498,119
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
Downstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128M17.T7 (MSMg01no128_m17.b1)MSMg01-128M17.TJ (MSMg01no128_m17.g1)
ACCAG336972AG336973
length719718
length of high quality
(start - end)
370 (40 - 409)335 (70 - 404)
definitionCHROMAT_FILE: MSMg01no128_m17.b1 PHD_FILE: MSMg01no128_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:00 2005CHROMAT_FILE: MSMg01no128_m17.g1 PHD_FILE: MSMg01no128_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGGAGCGCGGAATTCCT
CCTTCTTTCGCCATGAAAAAGCTGTCATCTTTCTTATATGTGTAAGTTCT
TCTTTCTTACAAGGGGATGAGGAAGTCAAACTTTTCCAAGAGAGAGAGAG
TACAGAAGAAATCACAGGCCATTGAGAATATTCAGGGGCCTAGGTCCGAA
TAAGCTTGCTGTGAACGAGATCTCTTATACGTGCTGGGAGAAGATGAGAA
ACAAACTGTCAAAACTGTGGGTTTTAGCTCTGTGTAGTAGCTCATGCCCC
TGTAATCCCAGCATTCTTGAGGGTGAGGCAGGAGGATTTCCTCAAGCTTG
AGGTCAGCCTGTGTTACATAGTGAGTTTCAGGCCAGCCAAGGCGACAGAC
TAACACTCCACCACAAGAGCAACAAAATCCGCTGCTTCTGTGGCTGTTGG
TTGGAAACCTCTGGAAACATTCTTTTCCATTGCTTATGTCTCCAGACCTT
GCAGATCATAAAATGTACTCTTCAGATTATAGCGCGAGTTCTAGGGAGTC
ACGTGGCCATTGCTGTCAGCTGCAAATACAGTTCTTTATTGTGGTTGCAG
CCTGTTCTCCCTAAAATAAAATTCAGCATGTGTGGAATTTAAGCTTAGCC
TGGTTTACTCCTCTGCCAAACATAATGTTAGTATAGCGGATATAATACTG
CGCTAACTTTCTTTTCAAC
TGCTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTTAGATCTCTACACCATTTTTAAACTGG
ATCATTTAGTTTGTTGGTCCCTAGTTTCTTGAGTTCTTTATATATTTTGG
AGAGCAGTCTTCTGTCAGATATGGTGTTGGTGAAGATCTTTTCCCATTCT
GTAGGCTGCCATTTTGTCCTATTGATGGTGTTCTTTGCCTTACAGAAGAA
GCTTTTCAGTTTCATTTATCAATTGTTGACCTTAGTGCCTGTACTATTGG
TGTTCTGTTCAGAAAGTTCCTCTTGTGCCAATGTGTTCAGATTCAGTATG
TCTGGTTTTATAGTGAGGTCTTTGATCCACCTGGACTGCAGTTTTGTGTA
GGGTGCTCTACCCCACCTATTTACATTCTTCTACATTCCAACATCTATTT
AGACCGGCACCAGTTGCTGAAAATGGTCTTTTTTTTCCCCATTGGCTTCT
TTATAAAACATCATATGCCTGTATGTGTGTGGACTTATGCCTAGGGCTTC
TATTTACTCCCACTAGTCAATGCGCCTGTGCTTATGGTAATATCATGTGG
CTTTTTATACTGTTTCCCTGGGCCTGAAGATTTGGCTCAGTATTTAAGAG
CACTGGTTTTCTTTCCAGGGGTCCTGATTTCATTTTCTAGCCTCCACCTG
GTTTTTCATTTTTACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_m17.b1 MSMg01no128_m17.b1 CHROMAT_FILE:
MSMg01no128_m17.b1 PHD_FILE: MSMg01no128_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:00 2005
         (370 letters)



>mm_chr2_58497549_58498319
          Length = 771

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/370 (97%), Gaps = 5/370 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctccttctttc---gccatgaaaaagctgtcatctttcttatatgtgtaagttc 60
           |||||||||||||   |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctccttca--catggccatgaaaaagctgtcatctttcttatatgtgtaagttc 261

                                                                       
Query: 61  ttctttcttacaaggggatgaggaagtcaaacttttccaagagagagagagtacagaaga 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttctttcttacaagggggtgaggaagtcaaacttttccaagagagagagagtacagaaga 321

                                                                       
Query: 121 aatcacaggccattgagaatattcaggggcctaggtccgaataagcttgctgtgaacgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aatcacaggccattgagaatattcaggggcctaggtccgaataagcttgctgtgaacgag 381

                                                                       
Query: 181 atctcttatacgtgctgggagaagatgagaaacaaactgtcaaaactgtgggttttagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atctcttatacgtgctgggagaagatgagaaacaaactgtcaaaactgtgggttttagct 441

                                                                       
Query: 241 ctgtgtagtagctcatgcccctgtaatcccagcattcttgagggtgaggcaggaggattt 300
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 442 ctgtgtagtagctcatgcccctgtaatcccagcattcaggagggtgaggcaggaggattt 501

                                                                       
Query: 301 cctcaagcttgaggtcagcctgtgttacatagtgagtttcaggccagccaaggcgacaga 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 502 cctcaagcttgaggtcagcctgtgctacatagtgagtttcaggccagccaaggcgacaga 561

                     
Query: 361 ctaacactcc 370
           ||||||||||
Sbjct: 562 ctaacactcc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space:   275082
Effective search space used:   275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)