Query= MSMg01no128_n19.b1 MSMg01no128_n19.b1 CHROMAT_FILE:
MSMg01no128_n19.b1 PHD_FILE: MSMg01no128_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:05 2005
(590 letters)
>mm_chr2_146411530_146412519
Length = 990
Score = 949 bits (491), Expect = 0.0
Identities = 555/587 (94%), Gaps = 17/587 (2%)
Strand = Plus / Minus
Query: 1 gaaacagaaccagaggtaaggggtaaaagcagaatttgcaccaagcacactgcctgtaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 955 gaaacagaaccagaggtaaggggtaaaagcagaatttgcaccaagcacactgtctgtaaa 896
Query: 61 actctcttaacacaactcagttctgattagtaaatatttgcaagtgttctcagggacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 actctcttaacacaactcagttctgattagtaaatatttgcaagtgttctcagggacaga 836
Query: 121 atttccatagccagatagtttattgcgccatatctgaaccccaggagctgtgggcatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atttccatagccagatagtttattgcgccatatctgaaccccaggagctgtgggcatgtg 776
Query: 181 aacaaggacttccctcctcagtacagagtgctctttcacaaataccactttgtccctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aacaaggacttccctcctcagtacagagtgctctttcacaaataccactttgtccctgga 716
Query: 241 gcctggtagattatgggaagggaaggaagagaactgatgttcattctgggaaatgggggt 300
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gcctggcagattatgggaagggaaggaagagaactgatgttcattctg------------ 668
Query: 301 gtctgtgtaagaatgtatgctgctgtataagagcccagtagcgcccggcatggtggtggg 360
|||||||| |||||||||||||| |||||||||| | | | |||||||||||||
Sbjct: 667 -----tgtaagaaagtatgctgctgtatgagagcccagtggtggctggcatggtggtgga 613
Query: 361 taatggtagagaaagctgctcacagtgtggctaggaagaaaataagataagcaggcagga 420
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 612 taatggtagagaaagctgctcacagtgtggctaggaagaaaataagagaaacaggcagga 553
Query: 421 tcccattatcctttcaagggcatgatctctggtacctaacctctttcctttaggcttcat 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 552 tcccattatcctttcaagggcatggcctctggtacctaacctctttcctttaggctccat 493
Query: 481 ctcataaagacttcacatctttctaatagtgccaagctgggaactgagcatatgagactt 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctcataaaggcttcacatctttctaatagtgccaagctgggaactgagcatatgagactt 433
Query: 541 gggggacatttccagttcaagctataacatcatacatctgacatctg 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gggggacatttccagttcaagctataacatcatacatctgacatctg 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_n19.g1 MSMg01no128_n19.g1 CHROMAT_FILE:
MSMg01no128_n19.g1 PHD_FILE: MSMg01no128_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:05 2005
(575 letters)
>mm_chr2_146305967_146306941
Length = 975
Score = 1104 bits (571), Expect = 0.0
Identities = 574/575 (99%)
Strand = Plus / Plus
Query: 1 aaggccagcctaggcttcatagcaagaacctctctcaacaacaagcgaaataacaaagtc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aaggccagcctaggcttcatagcaagaacctctctcaacaacaagtgaaataacaaagtc 260
Query: 61 aaaaaacaaccagtttcaggctcctgacctaactgaatgtttatagctctaagaagtagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaacaaccagtttcaggctcctgacctaactgaatgtttatagctctaagaagtagc 320
Query: 121 catcattcattcatttacaaagactgtttttcaggaattctactgggcttgaggaccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcattcattcatttacaaagactgtttttcaggaattctactgggcttgaggaccaag 380
Query: 181 gaataaaccaaagaagcaaaagtctctgccctgggtaatattacattttgcccagaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaataaaccaaagaagcaaaagtctctgccctgggtaatattacattttgcccagaggag 440
Query: 241 gcaaactataaataagctagaaaacacatgagcaaaagcaaatgaggaatattaaaatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaactataaataagctagaaaacacatgagcaaaagcaaatgaggaatattaaaatcc 500
Query: 301 aacatgcaatttgataagggaaggcaaaaaatactttcctgggaaagtgatagctagaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatgcaatttgataagggaaggcaaaaaatactttcctgggaaagtgatagctagaca 560
Query: 361 actttcccaaagtgaaagggactttacaacgggcaaaaaagcaagccatacagaaatatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actttcccaaagtgaaagggactttacaacgggcaaaaaagcaagccatacagaaatatg 620
Query: 421 agggagtcacccccagggagggagtgtggaccataccaagttcctgtggctaagcatgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggagtcacccccagggagggagtgtggaccataccaagttcctgtggctaagcatgct 680
Query: 481 tgatagagtcagaaaggccctggaggctacagcaaagatggagacattggagcagataag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgatagagtcagaaaggccctggaggctacagcaaagatggagacattggagcagataag 740
Query: 541 cttagagagcaagtgtggcaaagaaggcagatgag 575
|||||||||||||||||||||||||||||||||||
Sbjct: 741 cttagagagcaagtgtggcaaagaaggcagatgag 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
