BAC Information

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BAC

Clone NameMSMg01-129C10
Chromosome2 (Build37)
Map Location 108,534,357 - 108,534,626
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790
Downstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129C10.T7 (MSMg01no129_c10.b1)MSMg01-129C10.TJ (MSMg01no129_c10.g1)
ACCAG337234AG337235
length742798
length of high quality
(start - end)
---269 (135 - 403)
definitionCHROMAT_FILE: MSMg01no129_c10.b1 PHD_FILE: MSMg01no129_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:28 2005CHROMAT_FILE: MSMg01no129_c10.g1 PHD_FILE: MSMg01no129_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGGTGTCCTAAGAAGAGGAAACCTGGGTAGATCCTACACCAGTAGC
AGAGCCTCCTCTTATTATCCCCAAAATGTCACTGAACCATAATAGTGCTT
CCCTACAATCTGTAATTGGAGTATGTACTTGGAATTTGGGGAGTGACAGC
CTATTAACTGTTCTAACAATAGGGAAACTGATTATGTCTCCAGCCTTCAT
TGAAGCAGGAAGAAAATGAATACTATTAAACGCCACAGAACTTTCTTGGC
CTTCAGCTTTTACTAACTCATTTTTTTTCCTTATGCGAACGTACTTTACG
AATGTATTTATTTAAAACACCCTCCAAAAGGACTAATATATATTTACACT
CCCCTTATCATGAACACCACAAATAAATGACTAATTTATTCCTGACTATT
GCCGCCTAGTCTTTCCCATTACATCCGCTTTTGTAATTTCATATTGCTGG
CCTGAGAGAATTTATAGCATTCGTATGTTACAAACCCTCTATTGTTTTGA
TTTGCGAAACCACTAACCTCCTTGGTTTATTATTTTTACCCTTGCCCGAT
CCTTTACCCCCACCCCCCCGCTTCCTCGCCCCGGCTCTCCCTGTCCACTA
ATCGACTCCAGCTCCTCTCCGCTTATGCCTCTGCGCTTTCCTTTCGTTAT
CTCTATTGCGCCCAGTTTTCGCCCCCTACACTTCCGATATCC
NTTTCCCCTTTTTNNNNCCCCGTTCCCCGCACACTCTTGAGCGGATTAAT
ANNCCGAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCTCTTTACCTG
GCATTTCAGGAATTGCATGTCAGTTGTTTCTCCACCCCTCATTAGCTGAG
AATCTTCATTTCTTGATTTTGTAATCTTTGGAACTTCATAGAAGTCATAC
CATATGTTGTTTTTCTTCGTATGCCTAACTTAATTTCTTCATGTTTAAGG
ATGGGTAGTGTTGCTTTACGTGTATATGAACTAAAATGACCAAGGATTAA
TGGGGAAAGGGTAGAGGAGAGTTTCTACTCCAATAGTCATTATATTTTTG
CAATAAAGGGATTGGGTCTTTTTCTTTATTCCCAAATGATTCCAGGAAGT
CAGTAGTCCCAGTATCAACCCTAGTTCCAATTTAATAAAAAAATGGTTAT
CAGAGCTCATTCTTTATTTTACCTTATACGGTTTTTTTTCTCCCTCATAC
AATAATGATTATGTCATCATCGAGAATTTTAAAGATTGCTTTATTCCTTT
AGTAAAAATTAAAAACCAGCCACCTCCTTCTCAACTTTTAATTTTTAAAA
TGGCCCACCAACTTAACAAGGTTATAGTTATGTATGATTTTTCCTGAATT
TCATATATAGCTGTTATCAACCTGTTAAATTAAGCCCTCTGATAAATCCT
GCTTACTTTTGGAACTTCATGGGCCCTCCTACCTGGGGTTTTATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_c10.g1 MSMg01no129_c10.g1 CHROMAT_FILE:
MSMg01no129_c10.g1 PHD_FILE: MSMg01no129_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:28 2005
         (269 letters)



>mm_chr2_108534157_108534826
          Length = 670

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagctctttacctggcatttcaggaattgcatgtcagttgtttctccacccctcatta 60
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 470 cacagctctttacctggcatttcaggaattgcatgtcagttgattctcaacccctcatta 411

                                                                       
Query: 61  gctgagaatcttcatttcttgattttgtaatctttggaacttcatagaagtcataccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gctgagaatcttcatttcttgattttgtaatctttggaacttcatagaagtcataccata 351

                                                                       
Query: 121 tgttgtttttcttcgtatgcctaacttaatttcttcatgtttaaggatgggtagtgttgc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgttgtttttctttgtatgcctaacttaatttcttcatgtttaaggatgggtagtgttgc 291

                                                                       
Query: 181 tttacgtgtatat-gaactaaaatgaccaaggattaatggggaaagggtagaggagagtt 239
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tttacgtgtatatgggactaaaatgaccaaggattaatggggaaagggtagaggagagtt 231

                                         
Query: 240 tctactccaatagtcattatatttttgcaa 269
           ||||||||||||||||||||||||||||||
Sbjct: 230 tctactccaatagtcattatatttttgcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 670
Length adjustment: 9
Effective length of query: 260
Effective length of database: 661
Effective search space:   171860
Effective search space used:   171860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)